2008 | ||
---|---|---|
78 | EE | Gabi Kastenmüller, Johann Gasteiger, Hans-Werner Mewes: An environmental perspective on large-scale genome clustering based on metabolic capabilities. ECCB 2008: 56-62 |
77 | Alexey V. Antonov, Sabine Dietmann, Hans-Werner Mewes: Consecutive KEGG Pathway Models for the Interpretation of High-throughput Genomics Data. German Conference on Bioinformatics 2008: 1-9 | |
76 | EE | Igor V. Tetko, Igor V. Rodchenkov, Mathias C. Walter, Thomas Rattei, Hans-Werner Mewes: Beyond the "best" match: machine learning annotation of protein sequences by integration of different sources of information. Bioinformatics 24(5): 621-628 (2008) |
75 | EE | Dimitrij Surmeli, Oliver Ratmann, Hans-Werner Mewes, Igor V. Tetko: FunCat functional inference with belief propagation and feature integration. Computational Biology and Chemistry 32(5): 375-377 (2008) |
74 | EE | Alexey V. Antonov, Hans-Werner Mewes: Complex phylogenetic profiling reveals fundamental genotype-phenotype associations. Computational Biology and Chemistry 32(6): 412-416 (2008) |
73 | EE | Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei: MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Research 36(Database-Issue): 196-201 (2008) |
72 | EE | Thomas Rattei, Patrick Tischler, Roland Arnold, Franz Hamberger, Jörg Krebs, Jan Krumsiek, Benedikt Wachinger, Volker Stümpflen, Hans-Werner Mewes: SIMAP - structuring the network of protein similarities. Nucleic Acids Research 36(Database-Issue): 289-292 (2008) |
71 | EE | Andreas Ruepp, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Michael Stransky, Brigitte Waegele, Thorsten Schmidt, Octave Noubibou Doudieu, Volker Stümpflen, Hans-Werner Mewes: CORUM: the comprehensive resource of mammalian protein complexes. Nucleic Acids Research 36(Database-Issue): 646-650 (2008) |
2007 | ||
70 | Alexey V. Antonov, Hans-Werner Mewes: Revealing Comprehensive Genotype-Phenotype Associations through Logic Relationships. German Conference on Bioinformatics 2007: 185-197 | |
69 | EE | Matthias Oesterheld, Hans-Werner Mewes, Volker Stümpflen: Analysis of integrated biomolecular networks using a generic network analysis suite. J. Integrative Bioinformatics 4(3): (2007) |
68 | EE | M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman: PEDANT genome database: 10 years online. Nucleic Acids Research 35(Database-Issue): 354-357 (2007) |
2006 | ||
67 | EE | Thomas Rattei, Mathias C. Walter, Roland Arnold, David P. Anderson, Hans-Werner Mewes: Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence Analysis. GCCB 2006: 11-18 |
66 | EE | Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen: MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Research 34(Database-Issue): 169-172 (2006) |
65 | EE | Thomas Rattei, Roland Arnold, Patrick Tischler, Dominik Lindner, Volker Stümpflen, Hans-Werner Mewes: SIMAP: the similarity matrix of proteins. Nucleic Acids Research 34(Database-Issue): 252-256 (2006) |
64 | EE | Ulrich Güldener, Martin Münsterkötter, Matthias Oesterheld, Philipp Pagel, Andreas Ruepp, Hans-Werner Mewes, Volker Stümpflen: MPact: the MIPS protein interaction resource on yeast. Nucleic Acids Research 34(Database-Issue): 436-441 (2006) |
63 | EE | Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes, Gerhard Adam: FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. Nucleic Acids Research 34(Database-Issue): 456-458 (2006) |
62 | EE | Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, M. Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes: The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. Nucleic Acids Research 34(Database-Issue): 568-571 (2006) |
2005 | ||
61 | EE | Roland Arnold, Thomas Rattei, Patrick Tischler, Minh-Duc Truong, Volker Stümpflen, Hans-Werner Mewes: SIMAP - The similarity matrix of proteins. ECCB/JBI 2005: 46 |
60 | Alexey V. Antonov, Igor V. Tetko, Denis Kosykh, Dimitrij Surmeli, Hans-Werner Mewes: Exploiting scale-free information from expression data for cancer classification. German Conference on Bioinformatics 2005: 93-102 | |
59 | EE | Igor V. Tetko, Axel Facius, Andreas Ruepp, Hans-Werner Mewes: Super paramagnetic clustering of protein sequences. BMC Bioinformatics 6: 82 (2005) |
58 | EE | Igor V. Tetko, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Gisela Fobo, Andreas Ruepp, Alexey V. Antonov, Dimitrij Surmeli, Hans-Werner Mewes: MIPS bacterial genomes functional annotation benchmark dataset. Bioinformatics 21(10): 2520-2521 (2005) |
57 | EE | Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman: The MIPS mammalian protein?Cprotein interaction database. Bioinformatics 21(6): 832-834 (2005) |
56 | EE | Caroline C. Friedel, Katharina H. V. Jahn, Selina Sommer, Stephen Rudd, Hans-Werner Mewes, Igor V. Tetko: Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage. Bioinformatics 21(8): 1383-1388 (2005) |
55 | EE | Yu Wang, Igor V. Tetko, Mark A. Hall, Eibe Frank, Axel Facius, Klaus F. X. Mayer, Hans-Werner Mewes: Gene selection from microarray data for cancer classification - a machine learning approach. Computational Biology and Chemistry 29(1): 37-46 (2005) |
54 | EE | Alexey V. Antonov, Igor V. Tetko, Denis Kosykh, Dimitrij Surmeli, Hans-Werner Mewes: Exploiting scale-free information from expression data for cancer classification. Computational Biology and Chemistry 29(4): 288-293 (2005) |
53 | EE | M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman: The PEDANT genome database in 2005. Nucleic Acids Research 33(Database-Issue): 308-310 (2005) |
52 | EE | Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes: CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Research 33(Database-Issue): 364-368 (2005) |
2004 | ||
51 | EE | Hans-Werner Mewes: German Conference on Bioinformatics 2003 (GCB'03). Bioinformatics 20(10): 1481 (2004) |
50 | EE | Alexey V. Antonov, Igor V. Tetko, Volodymyr V. Prokopenko, Denis Kosykh, Hans-Werner Mewes: A web portal for classification of expression data using maximal margin linear programming. Bioinformatics 20(17): 3284-3285 (2004) |
49 | EE | Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer: The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinformatics 20(2): 268-270 (2004) |
48 | EE | Alexey V. Antonov, Igor V. Tetko, Michael T. Mader, Jan Budczies, Hans-Werner Mewes: Optimization models for cancer classification: extracting gene interaction information from microarray expression data. Bioinformatics 20(5): 644-652 (2004) |
47 | Heiko Schoof, Rebecca Ernst, Vladimir Nazarov, Lukas Pfeifer, Hans-Werner Mewes, Klaus F. X. Mayer: MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics. Nucleic Acids Research 32(Database-Issue): 373-376 (2004) | |
46 | Hans-Werner Mewes, C. Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp: MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Research 32(Database-Issue): 41-44 (2004) | |
2003 | ||
45 | Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman: Conservation of protein-protein interactions among Ascomycota species. German Conference on Bioinformatics 2003: 111-115 | |
44 | Alexey V. Antonov, Igor V. Tetko, Michael T. Mader, Jan Budczies, Hans-Werner Mewes: Exploiting gene interaction information from microarray expression data for cancer classification. German Conference on Bioinformatics 2003: 9-14 | |
43 | Stephen Rudd, Hans-Werner Mewes, Klaus F. X. Mayer: Sputnik: a database platform for comparative plant genomics. Nucleic Acids Research 31(1): 128-132 (2003) | |
42 | Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes: The PEDANT genome database. Nucleic Acids Research 31(1): 207-211 (2003) | |
2002 | ||
41 | Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes: Exon discovery by genomic sequence alignment. Bioinformatics 18(6): 777-787 (2002) | |
40 | Grigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman: SNAPper: gene order predicts gene function. Bioinformatics 18(7): 1017-1019 (2002) | |
39 | Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 30(1): 31-34 (2002) | |
38 | Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker: The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Research 30(1): 35-37 (2002) | |
37 | Heiko Schoof, Paolo Zaccaria, Heidrun Gundlach, Kai Lemcke, Stephen Rudd, Grigory Kolesov, Roland Arnold, Hans-Werner Mewes, Klaus F. X. Mayer: MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Research 30(1): 91-93 (2002) | |
2001 | ||
36 | Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes: Functional and structural genomics using PEDANT. Bioinformatics 17(1): 44-57 (2001) | |
35 | Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern: The HIB database of annotated UniGene clusters. Bioinformatics 17(6): 571-572 (2001) | |
34 | Winona C. Barker, John S. Garavelli, Zhenglin Hou, Hongzhan Huang, Robert S. Ledley, Peter B. McGarvey, Hans-Werner Mewes, Bruce C. Orcutt, Friedhelm Pfeiffer, Akira Tsugita, C. R. Vinayaka, Chunlin Xiao, Lai-Su L. Yeh, Cathy H. Wu: Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Research 29(1): 29-32 (2001) | |
2000 | ||
33 | Matthias Fellenberg, Kaj Albermann, Alfred Zollner, Hans-Werner Mewes, Jean Hani: Integrative Analysis of Protein Interaction Data. ISMB 2000: 152-161 | |
32 | C. Scharfe, Paolo Zaccaria, K. Hörtnagel, M. Jaksch, T. Klopstock, M. Dembowski, R. Lill, H. Prokisch, K. D. Gerbitz, W. Neupert, Hans-Werner Mewes, Thomas Meitinger: MITOP, the mitochondrial proteome database: 2000 update. Nucleic Acids Research 28(1): 155-158 (2000) | |
31 | Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 28(1): 37-40 (2000) | |
30 | Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy H. Wu: The Protein Information Resource (PIR). Nucleic Acids Research 28(1): 41-44 (2000) | |
1999 | ||
29 | Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer: Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany AAAI 1999 | |
28 | Ole Bents, Hans-Werner Mewes: A generic system for the management of sequence annotations. German Conference on Bioinformatics 1999: 179-180 | |
27 | Matthias Fellenberg, Hans-Werner Mewes: Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways. German Conference on Bioinformatics 1999: 185-187 | |
26 | Gabi Kastenmüller, Hans-Werner Mewes: An Object-Oriented Data Model for the Dynamic Modelling of Metabolic Pathways. German Conference on Bioinformatics 1999: 206-207 | |
25 | Paolo Zaccaria, Hans-Werner Mewes: Homology based gene prediction in Arabidopsis thaliana. German Conference on Bioinformatics 1999: 230-231 | |
24 | Normann Strack, Hans-Werner Mewes: SESAM: Seed Extraction Sequence Analysis Method. German Conference on Bioinformatics 1999: 59-65 | |
23 | C. Scharfe, Paolo Zaccaria, K. Hörtnagel, M. Jaksch, T. Klopstock, R. Lill, H. Prokisch, K. D. Gerbitz, Hans-Werner Mewes, Thomas Meitinger: MITOP: database for mitochondria-related proteins, genes and diseases. Nucleic Acids Research 27(1): 153-155 (1999) | |
22 | Winona C. Barker, John S. Garavelli, Peter B. McGarvey, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Robert S. Ledley, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita, Cathy H. Wu: The PIR-International Protein Sequence Database. Nucleic Acids Research 27(1): 39-43 (1999) | |
21 | Hans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 27(1): 44-48 (1999) | |
1998 | ||
20 | Normann Strack, Hans-Werner Mewes: An Object Oriented Approach to Data Handling and Semiautomatic Processing of cDNA Clones. German Conference on Bioinformatics 1998 | |
19 | Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand: Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics 1998 | |
18 | Andreas Kaps, Dirk Haase, Hans-Werner Mewes: Developing a groupware system for annotating Protein Sequences Using Object Oriented Technology. German Conference on Bioinformatics 1998 | |
17 | Kaj Albermann, Jean Hani, S. Stocker, Alfred Zollner, Hans-Werner Mewes: The MIPS Yeast Genome Database. German Conference on Bioinformatics 1998 | |
16 | Dmitrij Frishman, Klaus Heumann, A. Lesk, Hans-Werner Mewes: Comprehensive, comprehensible, distributed and intelligent databases: current status. Bioinformatics 14(7): 551-561 (1998) | |
15 | Winona C. Barker, John S. Garavelli, Daniel H. Haft, Lois T. Hunt, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Robert S. Ledley, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita: The PIR-International Protein Sequence Database. Nucleic Acids Research 26(1): 27-32 (1998) | |
14 | Hans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman: MIPS: a database for protein sequences and complete genomes. Nucleic Acids Research 26(1): 33-37 (1998) | |
1997 | ||
13 | Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, A. Maierl, Alfred Zollner, Hans-Werner Mewes: The MIPS Yeast Genome Database. German Conference on Bioinformatics 1997: 121-122 | |
12 | Antje Düsterhöft, B. Obermaier, T. Pohl, R. Wambutt, T. Altmann, Helmut Blöcker, H. Hoheisel, Hans-Werner Mewes, Annemarie Poustka: Custom Megabase Sequencing of a Small Eucaryotic Genome in Germany. German Conference on Bioinformatics 1997: 141 | |
11 | Andreas Kaps, Hans-Werner Mewes: Migrating to an Object-Oriented Protein Sequence Database. German Conference on Bioinformatics 1997: 157-158 | |
10 | Hans-Werner Mewes, Kaj Albermann, Klaus Heumann, S. Lieb, Friedhelm Pfeiffer: MIPS: a database for protein sequences, homology data and yeast genome information. Nucleic Acids Research 25(1): 28-30 (1997) | |
1996 | ||
9 | Hans-Werner Mewes, A. Gleissner, M. Bähr, Klaus Heumann: The Complete Sequence of the Yeast Genome. German Conference on Bioinformatics 1996: 110-112 | |
8 | Klaus Heumann, Hans-Werner Mewes: A Theoretical Model of Genome Redundancy. German Conference on Bioinformatics 1996: 221-223 | |
7 | Hans-Werner Mewes, A. Gleissner, M. Bähr, Klaus Heumann: Yeast Genome Sequence Data on Display. German Conference on Bioinformatics 1996: 275 | |
6 | Andreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes: Visualization and Analysis of the Complete Yeast Genome. German Conference on Bioinformatics - Selected Papers 1996: 178-188 | |
5 | Klaus Heumann, C. Harris, Hans-Werner Mewes: A Top-Down Approach to Whole Genome Visualization. ISMB 1996: 98-108 | |
4 | David G. George, Winona C. Barker, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita: The PIR-International Protein Sequence Database. Nucleic Acids Research 24(1): 17-20 (1996) | |
1995 | ||
3 | Hans-Werner Mewes, Klaus Heumann: Genome Analysis: Pattern Search in Biological Macromolecules. CPM 1995: 261-285 | |
1994 | ||
2 | Klaus Heumann, David G. George, Hans-Werner Mewes: A new concept of sequence data distribution on wide area networks. Computer Applications in the Biosciences 10(5): 519-526 (1994) | |
1993 | ||
1 | Winona C. Barker, David G. George, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita: The PIR-International databases. Nucleic Acids Research 21(13): 3089-3092 (1993) |