Mikhail P. Ponomarenko

2005
21	EE	Julia V. Ponomarenko, Galina Orlova, Tatyana I. Merkulova, Gennady V. Vasiliev, Mikhail P. Ponomarenko: Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site. International Journal on Artificial Intelligence Tools 14(4): 599-620 (2005)
2003
20		Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, Mikhail P. Ponomarenko: rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. Nucleic Acids Research 31(1): 118-121 (2003)
2002
19	EE	Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko: Mining DNA sequences to predict sites which mutations cause genetic diseases. Knowl.-Based Syst. 15(4): 225-233 (2002)
18		Julia V. Ponomarenko, Galina Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, Mikhail P. Ponomarenko: SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. Nucleic Acids Research 30(1): 195-199 (2002)
17		Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov: ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Research 30(1): 200-202 (2002)
2001
16		Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Elena Gorshkova, Oleg N. Fokin, Mikhail P. Ponomarenko: Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration. BIBE 2001: 153-160
15		Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko: Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations. German Conference on Bioinformatics 2001: 112-117
14		Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai: ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Research 29(1): 284-287 (2001)
13		Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai: rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. Nucleic Acids Research 29(1): 312-316 (2001)
2000
12		Julia V. Ponomarenko, Galina Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, Nikolay A. Kolchanov: SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. Nucleic Acids Research 28(1): 205-208 (2000)
1999
11		Victor G. Levitsky, Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay A. Kolchanov: Nucleosomal DNA property database. Bioinformatics 15(7): 582-592 (1999)
10		Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Olga A. Podkolodnaya, Denis G. Vorobiev, Nikolay A. Kolchanov, G. Christian Overton: Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. Bioinformatics 15(7): 631-643 (1999)
9		Julia V. Ponomarenko, Mikhail P. Ponomarenko, Anatoly S. Frolov, Denis G. Vorobiev, G. Christian Overton, Nikolay A. Kolchanov: Conformational and physicochemical DNA features specific for transcription factor binding sites. Bioinformatics 15(7): 654-668 (1999)
8		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton: Integrated databases and computer systems for studying eukaryotic gene expression. Bioinformatics 15(7): 669-686 (1999)
7		Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, L. K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton: Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. Bioinformatics 15(7): 687-703 (1999)
6		Alexey V. Kochetov, Mikhail P. Ponomarenko, Anatoly S. Frolov, L. L. Kisselev, Nikolay A. Kolchanov: Prediction of eukaryotic mRNA translational properties. Bioinformatics 15(7): 704-712 (1999)
1998
5		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer: GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104
1997
4		Mikhail P. Ponomarenko, Julia V. Ponomarenko, Alexander E. Kel, Nikolay A. Kolchanov, N. Karas, Edgar Wingender, Heinz Sklenar: Identification of the significant conformational features of functional sites in B-DNA. German Conference on Bioinformatics 1997: 171
3		Mikhail P. Ponomarenko, A. N. Kolchanova, Nikolay A. Kolchanov: Generating Programs for Predicting the Activity of Functional Sites. Journal of Computational Biology 4(1): 83- (1997)
1996
2		Alexander E. Kel, O. V. Kel, Oleg V. Vishnevsky, Mikhail P. Ponomarenko, I. V. Ischenko, Holger Karas, Edgar Wingender, Nikolay A. Kolchanov, Heinz Sklenar: TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. German Conference on Bioinformatics - Selected Papers 1996: 99-105
1993
1		Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov: SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. Computer Applications in the Biosciences 9(6): 617-627 (1993)

Coauthor Index

1	Dmitry A. Afonnikov	[17]
2	Elena A. Ananko	[5] [8]
3	V. V. Babenko	[8]
4	Vladimir N. Babenko	[5]
5	Oleg N. Fokin	[13] [15] [16] [19] [20]
6	Anatoly S. Frolov	[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [18] [20]
7	Dagmara P. Furman	[14]
8	Mikhail S. Gelfand	[18]
9	Elena Gorshkova	[15] [16] [19] [20]
10	T. N. Goryachkovskaya	[5] [8]
11	Dmitry A. Grigorovich	[8]
12	T. Heinemeyer	[5]
13	Elena V. Ignatieva	[5] [8]
14	I. V. Ischenko	[1] [2]
15	Holger Karas	[2]
16	N. Karas	[4]
17	Alexander E. Kel	[1] [2] [4] [5]
18	O. V. Kel	[2] [5]
19	L. L. Kisselev	[6]
20	Alexey V. Kochetov	[5] [6] [8]
21	Nikolay A. Kolchanov	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [14] [17]
22	A. N. Kolchanova	[3]
23	G. B. Kolesov	[5]
24	F. A. Kolpakov	[5] [8]
25	Y. V. Kondrakhin	[5] [8]
26	Sergey V. Lavryushev	[5] [8] [12] [13]
27	Zoya B. Levashova	[13]
28	Victor G. Levitsky	[11]
29	E. A. Likhachev	[1]
30	Tatyana I. Merkulova	[5] [8] [13] [15] [16] [19] [20] [21]
31	Luciano Milanesi	[1] [5] [8] [17]
32	Yuri L. Orlov	[1]
33	Galina Orlova	[12] [13] [14] [15] [16] [18] [19] [20] [21]
34	G. Christian Overton	[7] [8] [9] [10]
35	Olga A. Podkolodnaya	[5] [8] [10]
36	Nikolay L. Podkolodny	[5] [7] [8] [14]
37	Julia V. Ponomarenko	[4] [7] [9] [10] [11] [12] [13] [14] [15] [16] [18] [19] [20] [21]
38	Y. V. Ponomarenko	[5] [8]
39	Aida G. Romashchenko	[5]
40	Akinori Sarai	[13] [14]
41	L. K. Savinkova	[7]
42	Heinz Sklenar	[2] [4]
43	Victor V. Solovyev	[5] [8]
44	Irina L. Stepanenko	[5] [8]
45	Vadim P. Valuev	[17] [20]
46	Gennady V. Vasiliev	[13] [21]
47	Oleg V. Vishnevsky	[2]
48	Denis G. Vorobiev	[5] [8] [9] [10]
49	Edgar Wingender	[2] [4] [5] [8]
50	Svetlana V. Zybova	[12]