Eugene V. Koonin

2007
24	EE	Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka: A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals. RECOMB-CG 2007: 177-191
2006
23	EE	Kira S. Makarova, Eugene V. Koonin, Robert Haselkorn, Michael Y. Galperin: Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion. Bioinformatics 22(11): 1297-1301 (2006)
22	EE	Kira S. Makarova, Nick V. Grishin, Eugene V. Koonin: The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria. Bioinformatics 22(21): 2581-2584 (2006)
21	EE	Artem S. Novozhilov, Georgy P. Karev, Eugene V. Koonin: Biological applications of the theory of birth-and-death processes. Briefings in Bioinformatics 7(1): 70-85 (2006)
2005
20	EE	Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin: An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes. Comparative Genomics 2005: 35-46
19	EE	Georgy P. Karev, Faina S. Berezovskaya, Eugene V. Koonin: Modeling genome evolution with a diffusion approximation of a birth-and-death process. Bioinformatics 21(S3): 19 (2005)
18		Igor B. Rogozin, Alexander V. Sverdlov, Vladimir N. Babenko, Eugene V. Koonin: Analysis of evolution of exon-intron structure of eukaryotic genes. Briefings in Bioinformatics 6(2): 118-134 (2005)
2004
17		Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin: Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes. Briefings in Bioinformatics 5(2): 131-149 (2004)
2003
16	EE	Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson, Aviva R. Jacobs, Boris Kiryutin, Eugene V. Koonin, Dmitri M. Krylov, Raja Mazumder, Sergei L. Mekhedov, Anastasia N. Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf, Jodie J. Yin, Darren A. Natale: The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41 (2003)
15		Georgy P. Karev, Yuri I. Wolf, Eugene V. Koonin: Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve? Bioinformatics 19(15): 1889-1900 (2003)
2001
14		Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin: The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). Bioinformatics 17(10): 859-861 (2001)
13		Igor B. Rogozin, Alexey V. Kochetov, Fyodor A. Kondrashov, Eugene V. Koonin, Luciano Milanesi: Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a `weak' context of the start codon. Bioinformatics 17(10): 890-900 (2001)
12		Roman L. Tatusov, Darren A. Natale, Igor V. Garkavtsev, Tatiana A. Tatusova, Uma T. Shankavaram, Bachoti S. Rao, Boris Kiryutin, Michael Y. Galperin, Natalie D. Fedorova, Eugene V. Koonin: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Research 29(1): 22-28 (2001)
2000
11		Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller: Winnowing Sequences from a Database Search. Journal of Computational Biology 7(1-2): 293-302 (2000)
10		Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, Eugene V. Koonin: The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Research 28(1): 33-36 (2000)
1999
9	EE	Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller: Winnowing sequences from a database search. RECOMB 1999: 50-58
8		Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul: IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics 15(12): 1000-1011 (1999)
1998
7	EE	Eugene V. Koonin, Roman L. Tatusov, Michael Y. Galperin, Michael N. Rosanov: Genome analysis using clusters of orthologous groups (COGs). RECOMB 1998: 135-139
6	EE	Michael Y. Galperin, Eugene V. Koonin: Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement, and operon disruption. In Silico Biology 1: 7 (1998)
1997
5		Eugene V. Koonin, Roman L. Tatusov, David J. Lipman: A natural taxonomy of gene families from complete genomes. German Conference on Bioinformatics 1997: 13-14
4		D. Roland Walker, Eugene V. Koonin: SEALS: A System for Easy Analysis of Lots of Sequences. ISMB 1997: 333-339
1994
3		Roman L. Tatusov, Eugene V. Koonin: A simple tool to search for sequence motifs that are conserved in BLAST outputs. Computer Applications in the Biosciences 10(4): 457-459 (1994)
2		Eugene V. Koonin: Prediction of an rRNA methyltransferase domain in human tumor-specific nucleolar protein P120. Nucleic Acids Research 22(13): 2476-2478 (1994)
1992
1		Tatyana V. Ilyina, Eugene V. Koonin: Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Research 20(13): 3279-3285 (1992)

Coauthor Index

1	Stephen F. Altschul	[8]
2	L. Aravind	[8]
3	Vladimir N. Babenko	[18]
4	Faina S. Berezovskaya	[19]
5	Piotr Berman	[9] [11]
6	Mark Borodovsky	[14]
7	Chris Burge	[14]
8	Liran Carmel	[20]
9	Natalie D. Fedorova	[12] [16]
10	James W. Fickett	[14]
11	Michael Y. Galperin	[6] [7] [10] [12] [23]
12	Igor V. Garkavtsev	[12]
13	Nick V. Grishin	[22]
14	Robert Haselkorn	[23]
15	Tatyana V. Ilyina	[1]
16	John D. Jackson	[16]
17	Aviva R. Jacobs	[16]
18	Georgy P. Karev	[15] [19] [21]
19	Boris Kiryutin	[12] [16]
20	Alexey V. Kochetov	[13]
21	Fyodor A. Kondrashov	[13]
22	Dmitri M. Krylov	[16]
23	David J. Lipman	[5]
24	John Logsdon	[14]
25	Kira S. Makarova	[17] [22] [23]
26	Raja Mazumder	[16]
27	Sergei L. Mekhedov	[16]
28	Luciano Milanesi	[13]
29	Webb Miller	[9] [11]
30	Darren A. Natale	[10] [12] [16]
31	Anastasia N. Nikolskaya	[16]
32	Artem S. Novozhilov	[21]
33	Chris P. Ponting	[8]
34	Teresa M. Przytycka	[24]
35	B. Sridhar Rao	[16]
36	Bachoti S. Rao	[12]
37	Igor B. Rogozin	[13] [17] [18] [20] [24]
38	Michael N. Rosanov	[7]
39	Andrej Sali	[14]
40	Alejandro A. Schäffer	[8]
41	Uma T. Shankavaram	[12]
42	Sergei Smirnov	[16]
43	Gary D. Stormo	[14]
44	Alexander V. Sverdlov	[16] [18]
45	Roman L. Tatusov	[3] [5] [7] [10] [12] [16]
46	Tatiana A. Tatusova	[12]
47	Sona Vasudevan	[16]
48	D. Roland Walker	[4]
49	Yuri I. Wolf	[8] [9] [11] [15] [16] [17] [20]
50	Jodie J. Yin	[16]
51	Zheng Zhang	[9] [11]
52	Jie Zheng	[24]
53	Igor B. Zhulin	[14]

Colors in the list of coauthors