Tatyana I. Merkulova

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2008
14	EE	Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko: TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. Intell. Data Anal. 12(5): 443-461 (2008)
13	EE	Victor G. Levitsky, Elena V. Ignatieva, Eugenia Aman, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman: Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research. Intell. Data Anal. 12(5): 513-526 (2008)
2007
12	EE	Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, Elena A. Ananko, Dmitry Yu. Oshchepkov, Victor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman: Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. Briefings in Bioinformatics 8(4): 266-274 (2007)
2005
11	EE	Julia V. Ponomarenko, Galina Orlova, Tatyana I. Merkulova, Gennady V. Vasiliev, Mikhail P. Ponomarenko: Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site. International Journal on Artificial Intelligence Tools 14(4): 599-620 (2005)
2003
10		Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, Mikhail P. Ponomarenko: rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. Nucleic Acids Research 31(1): 118-121 (2003)
2002
9	EE	Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko: Mining DNA sequences to predict sites which mutations cause genetic diseases. Knowl.-Based Syst. 15(4): 225-233 (2002)
8		Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 2002. Nucleic Acids Research 30(1): 312-317 (2002)
2001
7		Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Elena Gorshkova, Oleg N. Fokin, Mikhail P. Ponomarenko: Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration. BIBE 2001: 153-160
6		Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko: Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations. German Conference on Bioinformatics 2001: 112-117
5		Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai: rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. Nucleic Acids Research 29(1): 312-316 (2001)
2000
4		Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton: Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Research 28(1): 298-301 (2000)
1999
3		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton: Integrated databases and computer systems for studying eukaryotic gene expression. Bioinformatics 15(7): 669-686 (1999)
2		Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Research 27(1): 303-306 (1999)
1998
1		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer: GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104

Coauthor Index

1 Eugenia Aman [13]

2 Elena A. Ananko [1] [2] [3] [4] [8] [12] [14]

3 V. V. Babenko [3]

4 Vladimir N. Babenko [1]

5 T. V. Busygina [2] [4]

6 Oleg N. Fokin [5] [6] [7] [9] [10]

7 Anatoly S. Frolov [1] [3] [5] [10]

8 Elena Gorshkova [6] [7] [9] [10]

9 T. N. Goryachkovskaya [1] [2] [3] [4]

10 Dmitry A. Grigorovich [3]

11 T. Heinemeyer [1]

12 Charlie Hodgman (T. Charles Hodgman) [12] [13]

13 Elena V. Ignatieva [1] [2] [3] [4] [8] [12] [13] [14]

14 Alexander E. Kel [1] [2] [4]

15 O. V. Kel [1]

16 Olga V. Kel-Margoulis [2] [4]

17 Tamara M. Khlebodarova [14]

18 Nataly V. Klimova [12]

19 Alexey V. Kochetov [1] [3]

20 Nikolay A. Kolchanov [1] [2] [3] [4] [8] [12] [13] [14]

21 G. B. Kolesov [1]

22 F. A. Kolpakov [1] [2] [3] [4]

23 Y. V. Kondrakhin [1] [3]

24 I. M. Korostishevskaya [4]

25 Sergey V. Lavryushev [1] [3] [5]

26 Zoya B. Levashova [5]

27 Victor G. Levitsky [12] [13]

28 Vasily M. Merkulov [12] [14]

29 Luciano Milanesi [1] [3]

30 Andrey N. Naumochkin [2] [4] [8]

31 Galina Orlova [5] [6] [7] [9] [10] [11]

32 Dmitry Yu. Oshchepkov [12]

33 G. Christian Overton [3] [4]

34 Olga A. Podkolodnaya [1] [2] [3] [4] [8] [14]

35 Nikolay L. Podkolodny [1] [2] [3] [4] [8] [14]

36 Julia V. Ponomarenko [5] [6] [7] [9] [10] [11]

37 Mikhail P. Ponomarenko [1] [3] [5] [6] [7] [9] [10] [11]

38 Y. V. Ponomarenko [1] [3]

39 Mikhail A. Pozdnyakov [8]

40 Aida G. Romashchenko [1] [2] [4] [8] [14]

41 Akinori Sarai [5]

42 Victor V. Solovyev [1] [3]

43 Irina L. Stepanenko [1] [2] [3] [4] [8] [14]

44 Vadim P. Valuev [10]

45 Gennady V. Vasiliev [5] [11] [12]

46 Denis G. Vorobiev [1] [3]

47 Edgar Wingender [1] [3]

1	Eugenia Aman	[13]
2	Elena A. Ananko	[1] [2] [3] [4] [8] [12] [14]
3	V. V. Babenko	[3]
4	Vladimir N. Babenko	[1]
5	T. V. Busygina	[2] [4]
6	Oleg N. Fokin	[5] [6] [7] [9] [10]
7	Anatoly S. Frolov	[1] [3] [5] [10]
8	Elena Gorshkova	[6] [7] [9] [10]
9	T. N. Goryachkovskaya	[1] [2] [3] [4]
10	Dmitry A. Grigorovich	[3]
11	T. Heinemeyer	[1]
12	Charlie Hodgman (T. Charles Hodgman)	[12] [13]
13	Elena V. Ignatieva	[1] [2] [3] [4] [8] [12] [13] [14]
14	Alexander E. Kel	[1] [2] [4]
15	O. V. Kel	[1]
16	Olga V. Kel-Margoulis	[2] [4]
17	Tamara M. Khlebodarova	[14]
18	Nataly V. Klimova	[12]
19	Alexey V. Kochetov	[1] [3]
20	Nikolay A. Kolchanov	[1] [2] [3] [4] [8] [12] [13] [14]
21	G. B. Kolesov	[1]
22	F. A. Kolpakov	[1] [2] [3] [4]
23	Y. V. Kondrakhin	[1] [3]
24	I. M. Korostishevskaya	[4]
25	Sergey V. Lavryushev	[1] [3] [5]
26	Zoya B. Levashova	[5]
27	Victor G. Levitsky	[12] [13]
28	Vasily M. Merkulov	[12] [14]
29	Luciano Milanesi	[1] [3]
30	Andrey N. Naumochkin	[2] [4] [8]
31	Galina Orlova	[5] [6] [7] [9] [10] [11]
32	Dmitry Yu. Oshchepkov	[12]
33	G. Christian Overton	[3] [4]
34	Olga A. Podkolodnaya	[1] [2] [3] [4] [8] [14]
35	Nikolay L. Podkolodny	[1] [2] [3] [4] [8] [14]
36	Julia V. Ponomarenko	[5] [6] [7] [9] [10] [11]
37	Mikhail P. Ponomarenko	[1] [3] [5] [6] [7] [9] [10] [11]
38	Y. V. Ponomarenko	[1] [3]
39	Mikhail A. Pozdnyakov	[8]
40	Aida G. Romashchenko	[1] [2] [4] [8] [14]
41	Akinori Sarai	[5]
42	Victor V. Solovyev	[1] [3]
43	Irina L. Stepanenko	[1] [2] [3] [4] [8] [14]
44	Vadim P. Valuev	[10]
45	Gennady V. Vasiliev	[5] [11] [12]
46	Denis G. Vorobiev	[1] [3]
47	Edgar Wingender	[1] [3]