Journal of Integrative Bioinformatics, Volume 5

Volume 5, Number 1, 2008

• Feroz Khan, S. P. Singh, B. N. Mishra:
  Conservation of the LexA repressor binding site in Deinococcus radiodurans.
  Electronic Edition (link) BibTeX
• Nicola Segata, Enrico Blanzieri, Corrado Priami:
  Towards the integration of computational systems biology and high-throughput data: supporting differential analysis of microarray gene expression data.
  Electronic Edition (link) BibTeX
• B. Jayashree, S. Rajgopal, D. Hoisington, V. P. Prasanth, S. Chandra:
  WebStruct and VisualStruct: web interfaces and visualization for Structure software implemented in a cluster environment.
  Electronic Edition (link) BibTeX
• David Cho Yau Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu:
  2.5D Visualisation of Overlapping Biological Networks.
  Electronic Edition (link) BibTeX

Volume 5, Number 2, 2008

• Jan Baumbach, Tobias Wittkop, Jochen Weile, Thomas Kohl, Sven Rahmann:
  MoRAine - A web server for fast computational transcription factor binding motif re-annotation.
  Electronic Edition (link) BibTeX
• Mounia Belmamoune, Fons J. Verbeek:
  Data Integration for Spatio-Temporal Patterns of Gene Expression of Zebrafish development: the GEMS database.
  Electronic Edition (link) BibTeX
• Thoralf Töpel, Benjamin Kormeier, Andreas Klassen, Ralf Hofestädt:
  BioDWH: A Data Warehouse Kit for Life Science Data Integration.
  Electronic Edition (link) BibTeX
• Robert Pesch, Artem Lysenko, Matthew Hindle, Keywan Hassani-Pak, Ralf Thiele, Christopher J. Rawlings, Jacob Köhler, Jan Taubert:
  Graph-based sequence annotation using a data integration approach.
  Electronic Edition (link) BibTeX
• Yudong Sun, Steve McKeever:
  Converting Biomolecular Modelling Data Based on an XML Representation.
  Electronic Edition (link) BibTeX
• Zhenggang Wang, Kwok Yip Szeto, Frederick Chi-Ching Leung:
  Effectiveness of Closure of Public Places with Time Delay in Disease Control.
  Electronic Edition (link) BibTeX
• Krzysztof Borowski, Jung Soh, Christoph W. Sensen:
  Visual Comparison of Multiple Gene Expression Datasets in a Genomic Context.
  Electronic Edition (link) BibTeX
• Olivia Sanchez-Graillet, Joanna Rowsell, William B. Langdon, Maria Stalteri, Jose M. Arteaga-Salas, Graham J. G. Upton, Andrew P. Harrison:
  Widespread existence of uncorrelated probe intensities from within the same probeset on Affymetrix GeneChips.
  Electronic Edition (link) BibTeX
• Yinyin Yuan, Chang-Tsun Li:
  A Bayes Random Field Approach for Integrative Large-Scale Regulatory Network Analysis.
  Electronic Edition (link) BibTeX
• Petteri Sevon, Lauri Eronen:
  Subgraph Queries by Context-free Grammars.
  Electronic Edition (link) BibTeX
• Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel, Thomas Lengauer, Mario Albrecht:
  Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks.
  Electronic Edition (link) BibTeX
• Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen:
  ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
  Electronic Edition (link) BibTeX
• Chanchal K. Mitra, Luciano Milanesi:
  An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site.
  Electronic Edition (link) BibTeX
• Detlef Groth, Stefanie Hartmann, Georgia Panopoulou, Albert J. Poustka, Steffen Hennig:
  GOblet: Annotation of anonymous sequence data with Gene Ontology and Pathway terms.
  Electronic Edition (link) BibTeX
• Li Teng, Laiwan Chan:
  Discovering Distinct Patterns in Gene Expression Profiles.
  Electronic Edition (link) BibTeX
• Renata da Silva Camargo, Mahesan Niranjan:
  Mining Protein Database using Machine Learning Techniques.
  Electronic Edition (link) BibTeX