Nikolay L. Podkolodny

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2008
16	EE	Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko: TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. Intell. Data Anal. 12(5): 443-461 (2008)
15	EE	D. S. Miginsky, V. V. Suslov, V. S. Timonov, D. A. Rasskazov, Natalia Yu. Sournina, Nikolay L. Podkolodny: Approaches to the computer reconstruction of the biological networks. Intell. Data Anal. 12(5): 463-479 (2008)
2007
14	EE	Tamara M. Khlebodarova, Nina V. Tikunova, Alla V. Kachko, Irina L. Stepanenko, Nikolay L. Podkolodny, Nikolay A. Kolchanov: Application of Bioinformatics Resources for Genosensor Design. J. Bioinformatics and Computational Biology 5(2b): 507-520 (2007)
2005
13	EE	Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Olga A. Podkolodnaya, D. A. Rasskazov, D. S. Miginsky, Vitali A. Likhoshvai, Alexander V. Ratushny, N. N. Podkolodnaya, Nikolay A. Kolchanov: GeneNet in 2005. Nucleic Acids Research 33(Database-Issue): 425-427 (2005)
2002
12	EE	Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin: GeneNet database: description and modeling of gene networks. In Silico Biology 2: 9 (2002)
11		Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 2002. Nucleic Acids Research 30(1): 312-317 (2002)
10		Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov: GeneNet: a database on structure and functional organisation of gene networks. Nucleic Acids Research 30(1): 398-401 (2002)
2001
9		Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny: Nucleosome formation potential of exons, introns, and Alu repeats. Bioinformatics 17(11): 1062-1064 (2001)
8		Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny: Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis. Bioinformatics 17(11): 998-1010 (2001)
7		Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai: ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Research 29(1): 284-287 (2001)
2000
6		Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton: Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Research 28(1): 298-301 (2000)
1999
5		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton: Integrated databases and computer systems for studying eukaryotic gene expression. Bioinformatics 15(7): 669-686 (1999)
4		Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, L. K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton: Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. Bioinformatics 15(7): 687-703 (1999)
3		Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Research 27(1): 303-306 (1999)
1998
2		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer: GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104
1		T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov: Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Research 26(1): 362-367 (1998)

Coauthor Index

1 Elena A. Ananko [1] [2] [3] [5] [6] [10] [11] [12] [13] [16]

2 V. V. Babenko [5]

3 Vladimir N. Babenko [2]

4 T. V. Busygina [3] [6]

5 Anatoly S. Frolov [2] [4] [5] [7]

6 Dagmara P. Furman [7]

7 T. N. Goryachkovskaya [2] [3] [5] [6]

8 Dmitry A. Grigorovich [5]

9 T. Heinemeyer [1] [2]

10 Henning Hermjakob [1]

11 Elena V. Ignatieva [1] [2] [3] [5] [6] [10] [11] [12] [16]

12 Alla V. Kachko [14]

13 Alexander E. Kel [1] [2] [3] [6]

14 O. V. Kel [2]

15 Olga V. Kel-Margoulis [1] [3] [6]

16 Tamara M. Khlebodarova [14] [16]

17 Alexey V. Kochetov [2] [5]

18 Nikolay A. Kolchanov [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [16]

19 G. B. Kolesov [2]

20 F. A. Kolpakov [1] [2] [3] [5] [6]

21 Y. V. Kondrakhin [2] [5]

22 I. M. Korostishevskaya [6]

23 Sergey V. Lavryushev [2] [5]

24 Victor G. Levitsky [8] [9]

25 Vitali A. Likhoshvai [12] [13]

26 Yuri G. Matushkin [12]

27 Vasily M. Merkulov [16]

28 Tatyana I. Merkulova [2] [3] [5] [6] [11] [16]

29 D. S. Miginsky [13] [15]

30 Luciano Milanesi [2] [5]

31 Andrey N. Naumochkin [3] [6] [11]

32 Eugenia A. Nedosekina [12]

33 Galina Orlova [7]

34 G. Christian Overton [4] [5] [6]

35 N. N. Podkolodnaya [13]

36 Olga A. Podkolodnaya [1] [2] [3] [5] [6] [8] [9] [10] [11] [12] [13] [16]

37 Julia V. Ponomarenko [4] [7]

38 Mikhail P. Ponomarenko [2] [4] [5] [7]

39 Y. V. Ponomarenko [2] [5]

40 Mikhail A. Pozdnyakov [11]

41 D. A. Rasskazov [13] [15]

42 Alexander V. Ratushny [12] [13]

43 Ingmar Reuter [1]

44 Aida G. Romashchenko [2] [3] [6] [11] [16]

45 Akinori Sarai [7]

46 L. K. Savinkova [4]

47 Victor V. Solovyev [2] [5]

48 Natalia Yu. Sournina [15]

49 Irina L. Stepanenko [2] [3] [5] [6] [10] [11] [12] [13] [14] [16]

50 V. V. Suslov [15]

51 Nina V. Tikunova [14]

52 V. S. Timonov [15]

53 Denis G. Vorobiev [2] [5]

54 Edgar Wingender [1] [2] [5]

1	Elena A. Ananko	[1] [2] [3] [5] [6] [10] [11] [12] [13] [16]
2	V. V. Babenko	[5]
3	Vladimir N. Babenko	[2]
4	T. V. Busygina	[3] [6]
5	Anatoly S. Frolov	[2] [4] [5] [7]
6	Dagmara P. Furman	[7]
7	T. N. Goryachkovskaya	[2] [3] [5] [6]
8	Dmitry A. Grigorovich	[5]
9	T. Heinemeyer	[1] [2]
10	Henning Hermjakob	[1]
11	Elena V. Ignatieva	[1] [2] [3] [5] [6] [10] [11] [12] [16]
12	Alla V. Kachko	[14]
13	Alexander E. Kel	[1] [2] [3] [6]
14	O. V. Kel	[2]
15	Olga V. Kel-Margoulis	[1] [3] [6]
16	Tamara M. Khlebodarova	[14] [16]
17	Alexey V. Kochetov	[2] [5]
18	Nikolay A. Kolchanov	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [16]
19	G. B. Kolesov	[2]
20	F. A. Kolpakov	[1] [2] [3] [5] [6]
21	Y. V. Kondrakhin	[2] [5]
22	I. M. Korostishevskaya	[6]
23	Sergey V. Lavryushev	[2] [5]
24	Victor G. Levitsky	[8] [9]
25	Vitali A. Likhoshvai	[12] [13]
26	Yuri G. Matushkin	[12]
27	Vasily M. Merkulov	[16]
28	Tatyana I. Merkulova	[2] [3] [5] [6] [11] [16]
29	D. S. Miginsky	[13] [15]
30	Luciano Milanesi	[2] [5]
31	Andrey N. Naumochkin	[3] [6] [11]
32	Eugenia A. Nedosekina	[12]
33	Galina Orlova	[7]
34	G. Christian Overton	[4] [5] [6]
35	N. N. Podkolodnaya	[13]
36	Olga A. Podkolodnaya	[1] [2] [3] [5] [6] [8] [9] [10] [11] [12] [13] [16]
37	Julia V. Ponomarenko	[4] [7]
38	Mikhail P. Ponomarenko	[2] [4] [5] [7]
39	Y. V. Ponomarenko	[2] [5]
40	Mikhail A. Pozdnyakov	[11]
41	D. A. Rasskazov	[13] [15]
42	Alexander V. Ratushny	[12] [13]
43	Ingmar Reuter	[1]
44	Aida G. Romashchenko	[2] [3] [6] [11] [16]
45	Akinori Sarai	[7]
46	L. K. Savinkova	[4]
47	Victor V. Solovyev	[2] [5]
48	Natalia Yu. Sournina	[15]
49	Irina L. Stepanenko	[2] [3] [5] [6] [10] [11] [12] [13] [14] [16]
50	V. V. Suslov	[15]
51	Nina V. Tikunova	[14]
52	V. S. Timonov	[15]
53	Denis G. Vorobiev	[2] [5]
54	Edgar Wingender	[1] [2] [5]