Elena V. Ignatieva

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2008
15	EE	Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko: TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. Intell. Data Anal. 12(5): 443-461 (2008)
14	EE	Victor G. Levitsky, Elena V. Ignatieva, Eugenia Aman, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman: Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research. Intell. Data Anal. 12(5): 513-526 (2008)
2007
13	EE	Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, Elena A. Ananko, Dmitry Yu. Oshchepkov, Victor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman: Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. Briefings in Bioinformatics 8(4): 266-274 (2007)
2004
12		Dmitry Yu. Oshchepkov, Eugenii E. Vityaev, Dmitry A. Grigorovich, Elena V. Ignatieva, Tamara M. Khlebodarova: SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition. Nucleic Acids Research 32(Web-Server-Issue): 208-212 (2004)
2002
11		Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvai, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, Yuri G. Matushkin: Gene Networks Description and Modeling in the GeneNet System. Gene Regulations and Metabolism 2002: 149-179
10	EE	Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin: GeneNet database: description and modeling of gene networks. In Silico Biology 2: 9 (2002)
9		Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 2002. Nucleic Acids Research 30(1): 312-317 (2002)
8		Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov: GeneNet: a database on structure and functional organisation of gene networks. Nucleic Acids Research 30(1): 398-401 (2002)
2000
7		Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton: Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Research 28(1): 298-301 (2000)
1999
6		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton: Integrated databases and computer systems for studying eukaryotic gene expression. Bioinformatics 15(7): 669-686 (1999)
5		Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Research 27(1): 303-306 (1999)
1998
4		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer: GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104
3		T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov: Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Research 26(1): 362-367 (1998)
1997
2		Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov: Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD). German Conference on Bioinformatics 1997: 153-154
1996
1		Elena A. Ananko, Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov: WWWTRRD: Hypertext Information System an Transcription Regulation. German Conference on Bioinformatics 1996: 153-155

Coauthor Index

1 Eugenia Aman [14]

2 Elena A. Ananko [1] [3] [4] [5] [6] [7] [8] [9] [10] [11] [13] [15]

3 V. V. Babenko [6]

4 Vladimir N. Babenko [4]

5 T. V. Busygina [5] [7]

6 Anatoly S. Frolov [4] [6]

7 T. N. Goryachkovskaya [4] [5] [6] [7]

8 Dmitry A. Grigorovich [6] [12]

9 T. Heinemeyer [3] [4]

10 Henning Hermjakob [3]

11 Charlie Hodgman (T. Charles Hodgman) [13] [14]

12 Alexander E. Kel [1] [2] [3] [4] [5] [7]

13 O. V. Kel [4]

14 Olga V. Kel-Margoulis [3] [5] [7]

15 Tamara M. Khlebodarova [12] [15]

16 Nataly V. Klimova [13]

17 Alexey V. Kochetov [4] [6]

18 Nikolay A. Kolchanov [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [13] [14] [15]

19 G. B. Kolesov [4]

20 F. A. Kolpakov [3] [4] [5] [6] [7]

21 Y. V. Kondrakhin [4] [6]

22 I. M. Korostishevskaya [7]

23 Sergey V. Lavryushev [4] [6]

24 Victor G. Levitsky [13] [14]

25 Vitali A. Likhoshvai [10] [11]

26 Yuri G. Matushkin [10] [11]

27 Vasily M. Merkulov [13] [15]

28 Tatyana I. Merkulova [4] [5] [6] [7] [9] [13] [14] [15]

29 Luciano Milanesi [4] [6]

30 Andrey N. Naumochkin [5] [7] [9]

31 Eugenia A. Nedosekina [10]

32 Dmitry Yu. Oshchepkov [12] [13]

33 G. Christian Overton [6] [7]

34 Olga A. Podkolodnaya [3] [4] [5] [6] [7] [8] [9] [10] [11] [15]

35 Nikolay L. Podkolodny [3] [4] [5] [6] [7] [8] [9] [10] [15]

36 Mikhail P. Ponomarenko [4] [6]

37 Y. V. Ponomarenko [4] [6]

38 Mikhail A. Pozdnyakov [9]

39 Alexander V. Ratushny [10] [11]

40 Ingmar Reuter [3]

41 Aida G. Romashchenko [4] [5] [7] [9] [15]

42 Victor V. Solovyev [4] [6]

43 Irina L. Stepanenko [4] [5] [6] [7] [8] [9] [10] [15]

44 Gennady V. Vasiliev [13]

45 Eugenii E. Vityaev [12]

46 Denis G. Vorobiev [4] [6]

47 Edgar Wingender [3] [4] [6]

1	Eugenia Aman	[14]
2	Elena A. Ananko	[1] [3] [4] [5] [6] [7] [8] [9] [10] [11] [13] [15]
3	V. V. Babenko	[6]
4	Vladimir N. Babenko	[4]
5	T. V. Busygina	[5] [7]
6	Anatoly S. Frolov	[4] [6]
7	T. N. Goryachkovskaya	[4] [5] [6] [7]
8	Dmitry A. Grigorovich	[6] [12]
9	T. Heinemeyer	[3] [4]
10	Henning Hermjakob	[3]
11	Charlie Hodgman (T. Charles Hodgman)	[13] [14]
12	Alexander E. Kel	[1] [2] [3] [4] [5] [7]
13	O. V. Kel	[4]
14	Olga V. Kel-Margoulis	[3] [5] [7]
15	Tamara M. Khlebodarova	[12] [15]
16	Nataly V. Klimova	[13]
17	Alexey V. Kochetov	[4] [6]
18	Nikolay A. Kolchanov	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [13] [14] [15]
19	G. B. Kolesov	[4]
20	F. A. Kolpakov	[3] [4] [5] [6] [7]
21	Y. V. Kondrakhin	[4] [6]
22	I. M. Korostishevskaya	[7]
23	Sergey V. Lavryushev	[4] [6]
24	Victor G. Levitsky	[13] [14]
25	Vitali A. Likhoshvai	[10] [11]
26	Yuri G. Matushkin	[10] [11]
27	Vasily M. Merkulov	[13] [15]
28	Tatyana I. Merkulova	[4] [5] [6] [7] [9] [13] [14] [15]
29	Luciano Milanesi	[4] [6]
30	Andrey N. Naumochkin	[5] [7] [9]
31	Eugenia A. Nedosekina	[10]
32	Dmitry Yu. Oshchepkov	[12] [13]
33	G. Christian Overton	[6] [7]
34	Olga A. Podkolodnaya	[3] [4] [5] [6] [7] [8] [9] [10] [11] [15]
35	Nikolay L. Podkolodny	[3] [4] [5] [6] [7] [8] [9] [10] [15]
36	Mikhail P. Ponomarenko	[4] [6]
37	Y. V. Ponomarenko	[4] [6]
38	Mikhail A. Pozdnyakov	[9]
39	Alexander V. Ratushny	[10] [11]
40	Ingmar Reuter	[3]
41	Aida G. Romashchenko	[4] [5] [7] [9] [15]
42	Victor V. Solovyev	[4] [6]
43	Irina L. Stepanenko	[4] [5] [6] [7] [8] [9] [10] [15]
44	Gennady V. Vasiliev	[13]
45	Eugenii E. Vityaev	[12]
46	Denis G. Vorobiev	[4] [6]
47	Edgar Wingender	[3] [4] [6]