GCB 1999: Hannover, Germany

Talks

• David Penny: What can bioinformatics contribute to explain the origin of life? 1 BibTeX
• Tobias Müller, Rainer Spang, Martin Vingron: A new method for modeling protein evolution. 2-8 BibTeX
• Jan Cupal: Topology in Phenotype Space. 9-15 BibTeX
• William R. Atchley: An Information Theoretic Analysis Of Correlation Among Amino Acid Sites In bHLH Protein Domains. 16 BibTeX
• Knut Reinert, Jens Stoye, Torsten Will: Combining Divide-and-Conquer, the A^*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. 17-24 BibTeX
• Niels Grabe, Ralf Hofestädt: Predicting transcription factor binding sites by constructing context specific matrices. 25-36 BibTeX
• Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Christian Lemmen, Alex J. Smola, Thomas Lengauer, Klaus-Robert Müller: Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites. 37-43 BibTeX
• Gene Myers: A Whole Genome Assembler for Drosophila. 44 BibTeX
• Bastien Chevreux, Thomas Wetter, Sándor Suhai: Genome Sequence Assembly Using Trace Signals and Additional Sequence Information. 45-56 BibTeX
• Akinori Sarai: Methods for Predicting Target Sites of Transcription Factors. 57-58 BibTeX
• Normann Strack, Hans-Werner Mewes: SESAM: Seed Extraction Sequence Analysis Method. 59-65 BibTeX
• Marc Rehmsmeier, Martin Vingron: Phylogeny meets sequence search. 66-72 BibTeX
• Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler: Conserved secondary structures in hepatitis B virus DNA. 73-79 BibTeX
• Dietmar Schomburg: Functional Genomics - an integrated approach to the biosiences. 80 BibTeX
• Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Computational Molecular Biology. 81-92 BibTeX
• Rolf Backofen, Sebastian Will, Peter Clote: Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. 93-106 BibTeX
• G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler: An efficient potential for protein sequence design. 107-112 BibTeX
• Klaus Prank, Georg Brabant: Quantitative approach to the analysis of complex hormonal signalling. 113-126 BibTeX
• Daisuke Tominaga, Masahiro Okamoto, Yukihiro Maki, Shoji Watanabe, Yukihiro Eguchi: Nonlinear Numerical Optimization Technique Based on a Genetic Algorithm for Inverse Problems: Towards the Inference of Genetic Networks. 127-140 BibTeX
• Robert Küffner, Ralf Zimmer, Thomas Lengauer: Pathway analysis in metabolic databases via differetial metabolic display (DMD). 141-147 BibTeX
• Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender: E2F composite units in promoters of cell cycle genes. 148-154 BibTeX
• Jacqueline Renée Reich: Onthological design patternsfor the integration of molecular biological information. 156-166 BibTeX
• Guy Perrière, Laurent Duret: HOBACGEN: A database of homologous genes in bacteria. 167-173 BibTeX
• Xin Chen, Andreas W. M. Dress, Holger Karas, Ingmar Reuter, Edgar Wingender: A database framework for mapping expression patterns. 174-178 BibTeX

Posters

• Ole Bents, Hans-Werner Mewes: A generic system for the management of sequence annotations. 179-180 BibTeX
• Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader: Clustering Protein Sequences ? Structure Prediction by Transitive Homology. 181 BibTeX
• Xin Chen, Edgar Wingender: CYTOMER® : A database on gene expression sources. 182-183 BibTeX
• Bastien Chevreux, Thomas Pfisterer, Thomas Wetter, Sándor Suhai: Assembly of Genomic Sequences Assisted by Automatic Finishing. 183-184 BibTeX
• Peter Ernst, Karl-Heinz Glatting, Martin Senger, Sándor Suhai: W2H: a WWW Interface to Applications in Bioinformatics. 184-185 BibTeX
• Matthias Fellenberg, Hans-Werner Mewes: Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways. 185-187 BibTeX
• Markus Fischer, Tanja Schulz, Jürgen Pleiss, Rolf D. Schmid: Understanding the sequence-structure-function relationship of lipases. 188 BibTeX
• Georg Fuellen, Johann-Wolfgang Wägele: Erosion Detection Yields More Plausible Phylogenetic Trees. 189 BibTeX
• Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz: MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. 190-194 BibTeX
• David Gilbert, Juris Viksna: Pattern discovery methods for protein topology diagrams. 194-196 BibTeX
• Christoph Gille, Andrean Goede, Kristian Rother, Robert Preissner, Cornelius Frömmel: Interfaces of Secondary Structural Elements in Proteins - Evolution of Atomic Substructures -. 196 BibTeX
• Ruediger Goetz, Corinna Morys-Wortmann, Marcel Thürk: Drug Design Using an Iterative Computer Aided Process. 197 BibTeX
• Korbinian Grote, Ralf Schneider, Thomas Werner: Kohonen maps are suitable for a biologically meaningful classification of transcription factor binding site matrices. 198-199 BibTeX
• Reinhard Guthke, Wolfgang Schmidt-Heck, Peter Müller, Heike Rodig, Ralph Berkholz: Data and knowlage based experimental design for bioprocess optimization. 199-200 BibTeX
• Karsten Hokamp, Kenneth H. Wolfe: What's new in the library? What's new in GenBank? Let PubCrawler tell you! 200-201 BibTeX
• Dirk Holste, Dieter Beule, Wolfram Liebermeister, Johannes Schuchhardt, Hanspeter Herzel: Mutual Information Analysis of Surrogate Gene Expression Data. 201-204 BibTeX
• Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach: Interactive Biochemical Pathways. 204-205 BibTeX
• Gabi Kastenmüller, Hans-Werner Mewes: An Object-Oriented Data Model for the Dynamic Modelling of Metabolic Pathways. 206-207 BibTeX
• Ina Koch, Stefan Schuster, Monika Heiner: Simulation and analysis of metabolic networks by time-dependent Petri nets. 208-209 BibTeX
• Oliver Leven, Dietmar Schomburg: Prediction of Protein Thermostability. 210 BibTeX
• Ines Liebich, Jürgen Bode, Edgar Wingender: S/MARt DB: A database on chromatin organizing S/MAR regions. 210-212 BibTeX
• T. Meinhardt, M. Prüß, Edgar Wingender: PathoDB - a database that combines pathological data with molecular information. 212-213 BibTeX
• Michael Meyer, Thomas Steinke, Jürgen Sühnel, Maria Brandl: Density functional study of guanine quartet structures. 213-215 BibTeX
• Michael Meyer, Wolfram Trowitzsch-Kienast: Active analog modelling of novel siderophores. 215-216 BibTeX
• Steffen Möller, Michael J. Wise, David P. Kreil, Michael Schroeder, D. Gilbest, Rolf Apweiler: Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT. 216-218 BibTeX
• Arne Müller, Robert M. MacCallum, Michael J. E. Sternberg: Genome annotation with PSI-BLAST: Benchmark and application. 218-220 BibTeX
• Steffen Neumann, Stefan Posch, Gerhard Sagerer: Towards Evaluation of Docking Hypotheses using elastic Matching. 220-221 BibTeX
• Thomas Pfeiffer, Juan Carlos Nuño, Francisco Montero, Stefan Schuster: Analyzing Large enzymatic reaction networks. 221-223 BibTeX
• Frank Schacherer, Edgar Wingender: The Transpath Signal Transduction Database. 223-225 BibTeX
• Alexander Schliep: Learning Hidden Markov Model Topology. 225-226 BibTeX
• Dietmar Schomburg, Ida Schomburg, Antje Chang, C. Bänsch: BRENDA the Information System for Enzymes and metabolic Information. 226-227 BibTeX
• Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak: Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. 227-229 BibTeX
• Arno Velds, Henning Hermjakob, Rolf Apweiler: Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. 229-230 BibTeX
• Paolo Zaccaria, Hans-Werner Mewes: Homology based gene prediction in Arabidopsis thaliana. 230-231 BibTeX
• Olav Zimmermann, Peter Krämer, Dietmar Schomburg: Pre- and Postfiltering in Protein Docking. 231-232 BibTeX
• Peter Ernst, Mechthild Falkenhahn, Karl-Heinz Glatting, Agnes Hotz-Wagenblatt, Clemens Suter-Crazzolara, Sándor Suhai: The Biocomputing Service Group at the DKFZ. 232-233 BibTeX
• K.-P. Pleissner, W. Michalek, A. Graner: Genome Analysis in Barley: Consttuction of EST Databases. 233-234 BibTeX