Ina Koch

2008
20	EE	Stefanie Grunwald, Astrid Speer, Jörg Ackermann, Ina Koch: Petri net modelling of gene regulation of the Duchenne muscular dystrophy. Biosystems 92(2): 189-205 (2008)
19	EE	Ina Koch, Georg Fuellen: A review of bioinformatics education in Germany. Briefings in Bioinformatics 9(3): 232-242 (2008)
2007
18	EE	Andrea Sackmann, Dorota Formanowicz, Piotr Formanowicz, Ina Koch, Jacek Blazewicz: An analysis of the Petri net based model of the human body iron homeostasis process. Computational Biology and Chemistry 31(1): 1-10 (2007)
2006
17	EE	Maurice Scheer, Frank Klawonn, Richard Münch, Andreas Grote, Karsten Hiller, Claudia Choi, Ina Koch, Max Schobert, Elisabeth Härtig, Ulrich Klages, Dieter Jahn: JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. Nucleic Acids Research 34(Web-Server-Issue): 510-515 (2006)
2005
16	EE	Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser: Columba: an integrated database of proteins, structures, and annotations. BMC Bioinformatics 6: 81 (2005)
15	EE	Ina Koch, Bjørn H. Junker, Monika Heiner: Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. Bioinformatics 21(7): 1219-1226 (2005)
14	EE	Louchka Popova-Zeugmann, Monika Heiner, Ina Koch: Time Petri Nets for Modelling and Analysis of Biochemical Networks. Fundam. Inform. 67(1-3): 149-162 (2005)
2004
13	EE	Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser: Columba: Multidimensional Data Integration of Protein Annotations. DILS 2004: 156-171
12	EE	Monika Heiner, Ina Koch: Petri Net Based Model Validation in Systems Biology. ICATPN 2004: 216-237
11	EE	Patrick May, Stefan Barthel, Ina Koch: PTGL - a web-based database application for protein topologies. Bioinformatics 20(17): 3277-3279 (2004)
10	EE	Ina Koch, Markus Schüler, Monika Heiner: STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks. In Silico Biology 5: (2004)
2003
9	EE	Monika Heiner, Ina Koch, Jürgen Will: Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis. CMSB 2003: 173
8	EE	Klaus Voss, Monika Heiner, Ina Koch: Steady state analysis of metabolic pathways using Petri nets. In Silico Biology 3: 31 (2003)
2002
7		Stéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch: Theoretical analysis of alternative splice forms using computational methods. ECCB 2002: 65-73
6		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18(2): 351-361 (2002)
2001
5	EE	Ina Koch: Enumerating all connected maximal common subgraphs in two graphs. Theor. Comput. Sci. 250(1-2): 1-30 (2001)
2000
4		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. German Conference on Bioinformatics 2000: 115-120
1999
3		Ina Koch, Stefan Schuster, Monika Heiner: Simulation and analysis of metabolic networks by time-dependent Petri nets. German Conference on Bioinformatics 1999: 208-209
1997
2		Ina Koch, Thomas Lengauer: Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. ISMB 1997: 167-178
1996
1		Ina Koch, Thomas Lengauer, Egon Wanke: An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. Journal of Computational Biology 3(2): 289-306 (1996)

Coauthor Index

1	Jörg Ackermann	[20]
2	Stefan Barthel	[11]
3	Jacek Blazewicz	[18]
4	Stéphanie Boué	[7]
5	Claudia Choi	[17]
6	Thomas Dandekar	[4] [6]
7	Dorota Formanowicz	[18]
8	Piotr Formanowicz	[18]
9	Cornelius Frömmel	[13] [16]
10	Georg Fuellen	[19]
11	Andreas Grote	[17]
12	Stefanie Grunwald	[20]
13	Elisabeth Härtig	[17]
14	Monika Heiner	[3] [8] [9] [10] [12] [14] [15]
15	Karsten Hiller	[17]
16	Dieter Jahn	[17]
17	Bjørn H. Junker	[15]
18	Ulrich Klages	[17]
19	Frank Klawonn	[17]
20	Evgenia V. Kriventseva	[7]
21	Thomas Lengauer	[1] [2]
22	Ulf Leser	[13] [16]
23	Patrick May	[11]
24	Ferdinand Moldenhauer	[4] [6]
25	Heiko Müller	[13] [16]
26	Richard Münch	[17]
27	Thomas Pfeiffer	[4] [6]
28	Louchka Popova-Zeugmann	[14]
29	Robert Preissner	[13] [16]
30	Kristian Rother	[13] [16]
31	Andrea Sackmann	[18]
32	Maurice Scheer	[17]
33	Max Schobert	[17]
34	Markus Schüler	[10]
35	Stefan Schuster	[3] [4] [6]
36	Astrid Speer	[20]
37	Thomas Steinke	[13] [16]
38	Silke Trißl	[13] [16]
39	Martin Vingron	[7]
40	Klaus Voss	[8]
41	Egon Wanke	[1]
42	Jürgen Will	[9]

Colors in the list of coauthors