2009 | ||
---|---|---|
65 | EE | Rainer Pudimat, Rolf Backofen, Ernst Günter Schukat-Talamazzini: Fast Feature Subset Selection in Biological Sequence Analysis. IJPRAI 23(2): 191-207 (2009) |
2008 | ||
64 | EE | Mathias Möhl, Sebastian Will, Rolf Backofen: Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots. CPM 2008: 69-81 |
63 | Wolfgang Otto, Sebastian Will, Rolf Backofen: Structural Local Multiple Alignment of RNA. German Conference on Bioinformatics 2008: 178-177 | |
62 | Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen: Lightweight Comparison of RNAs based on Exact Sequence-structure Matches. German Conference on Bioinformatics 2008: 189- | |
61 | EE | Stéphane Zampelli, Martin Mann, Yves Deville, Rolf Backofen: Decomposition Techniques for Subgraph Matching CoRR abs/0805.1030: (2008) |
60 | EE | Sebastian Will, Anke Busch, Rolf Backofen: Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination. Constraints 13(1-2): 110-129 (2008) |
2007 | ||
59 | EE | Rolf Backofen, Sven Siebert: Fast detection of common sequence structure patterns in RNAs. J. Discrete Algorithms 5(2): 212-228 (2007) |
58 | EE | Sven Siebert, Rolf Backofen: A Dynamic Programming Approach for Finding Common Patterns in RNAs. Journal of Computational Biology 14(1): 33-44 (2007) |
57 | EE | Rolf Backofen, Shihyen Chen, Danny Hermelin, Gad M. Landau, Mikhail A. Roytberg, Oren Weimann, Kaizhong Zhang: Locality and Gaps in RNA Comparison. Journal of Computational Biology 14(8): 1074-1087 (2007) |
56 | EE | Michael Hiller, Swetlana Nikolajewa, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schuster, Rolf Backofen, Matthias Platzer: TassDB: a database of alternative tandem splice sites. Nucleic Acids Research 35(Database-Issue): 188-192 (2007) |
55 | EE | Anke Busch, Rolf Backofen: INFO-RNA - a server for fast inverse RNA folding satisfying sequence constraints. Nucleic Acids Research 35(Web-Server-Issue): 310-313 (2007) |
54 | EE | Swetlana Nikolajewa, Rainer Pudimat, Michael Hiller, Matthias Platzer, Rolf Backofen: BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data. Nucleic Acids Research 35(Web-Server-Issue): 688-693 (2007) |
2006 | ||
53 | EE | Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann: Local Alignment of RNA Sequences with Arbitrary Scoring Schemes. CPM 2006: 246-257 |
52 | EE | Anke Busch, Rolf Backofen: INFO-RNA - a fast approach to inverse RNA folding. Bioinformatics 22(15): 1823-1831 (2006) |
51 | EE | Rolf Backofen, Sebastian Will: A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models. Constraints 11(1): 5-30 (2006) |
2005 | ||
50 | Sven Siebert, Rolf Backofen: A New Distance Measure of RNA Ensembles and Its Application to Phylogenetic Tree Construction. CIBCB 2005: 150-157 | |
49 | EE | Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann: Normalized Similarity of RNA Sequences. SPIRE 2005: 360-369 |
48 | EE | Rainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen: A multiple-feature framework for modelling and predicting transcription factor binding sites. Bioinformatics 21(14): 3082-3088 (2005) |
47 | EE | Anke Busch, Sebastian Will, Rolf Backofen: SECISDesign: a server to design SECIS-elements within the coding sequence. Bioinformatics 21(15): 3312-3313 (2005) |
46 | EE | Sven Siebert, Rolf Backofen: MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. Bioinformatics 21(16): 3352-3359 (2005) |
2004 | ||
45 | EE | Rolf Backofen, Anke Busch: Computational Design of New and Recombinant Selenoproteins. CPM 2004: 270-284 |
44 | Rainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen: Feature Based Representation and Detection of Transcription Factor Binding Sites. German Conference on Bioinformatics 2004: 43-52 | |
43 | EE | Rolf Backofen, Sven Siebert: Fast Detection of Common Sequence Structure Patterns in RNAs. SPIRE 2004: 79-92 |
42 | EE | Michael Hiller, Rolf Backofen, Stephan Heymann, Anke Busch, Timo Mika Gläßer, Johann Christoph Freytag: Efficient prediction of alternative splice forms using protein domain homology. In Silico Biology 4: (2004) |
41 | EE | Rolf Backofen, Sebastian Will: Local Sequence-structure Motifs in Rna. J. Bioinformatics and Computational Biology 2(4): 681-698 (2004) |
40 | EE | Rolf Backofen: A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC). J. Discrete Algorithms 2(2): 161-206 (2004) |
2003 | ||
39 | Sven Siebert, Rolf Backofen: MARNA: A server for multiple alignment of RNAs. German Conference on Bioinformatics 2003: 135-140 | |
38 | EE | Rolf Backofen, Sebastian Will: A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods. ICLP 2003: 49-71 |
2002 | ||
37 | EE | Rolf Backofen, N. S. Narayanaswamy, Firas Swidan: On the Complexity of Protein Similarity Search under mRNA Structure Constraints. STACS 2002: 274-286 |
36 | Rolf Backofen, Sebastian Will: Excluding Symmetries in Constraint-Based Search. Constraints 7(3-4): 333-349 (2002) | |
35 | EE | Rolf Backofen, N. S. Narayanaswamy, Firas Swidan: Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. In Silico Biology 2: 26 (2002) |
2001 | ||
34 | Rolf Backofen: Introduction to Bioinformatics. ACL (Companion Volume) 2001: 4 | |
33 | EE | Rolf Backofen, Sebastian Will: Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores. CP 2001: 494-508 |
32 | EE | Rolf Backofen, Sebastian Will: Optimally Compact Finite Sphere Packings - Hydrophobic Cores in the FCC. CPM 2001: 257-272 |
31 | Rolf Backofen, N. S. Narayanaswamy, Firas Swidan: Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. German Conference on Bioinformatics 2001: 135-140 | |
30 | EE | Rolf Backofen: RNA-Sequence-Structure Properties and Selenocysteine Insertion. IDA 2001: 187-197 |
29 | David Gilbert, Rolf Backofen, Roland H. C. Yap: Introduction to the Special Issue on Bioinformatics. Constraints 6(2/3): 139 (2001) | |
28 | Rolf Backofen, David Gilbert: Bioinformatics and Constraints. Constraints 6(2/3): 141-156 (2001) | |
27 | Rolf Backofen: The Protein Structure Prediction Problem: A Constraint Optimization Approach using a New Lower Bound. Constraints 6(2/3): 223-255 (2001) | |
2000 | ||
26 | EE | Rolf Backofen: An Upper Bound for Number of Contacts in the HP-Model on the Face-Centered-Cubic Lattice (FCC). CPM 2000: 277-292 |
1999 | ||
25 | Rolf Backofen, Sebastian Will: Excluding Symmetries in Constraint-Based Search. CP 1999: 73-87 | |
24 | Rolf Backofen, Sebastian Will, Peter Clote: Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. German Conference on Bioinformatics 1999: 93-106 | |
23 | Rolf Backofen, Sebastian Will, Erich Bornberg-Bauer: Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets. Bioinformatics 15(3): 234-242 (1999) | |
22 | EE | Rolf Backofen, François Bry, Peter Clote, Hans-Peter Kriegel, Thomas Seidl, Klaus U. Schulz: Bioinformatik - Aktuelles Schlagwort. Informatik Spektrum 22(5): 376-378 (1999) |
1998 | ||
21 | EE | Rolf Backofen: Constraint Techniques for Solving the Protein Structure Prediction Problem. CP 1998: 72-86 |
20 | Rolf Backofen, Sebastian Will: Structure prediction in an HP-type lattice with an extended alphabet. German Conference on Bioinformatics 1998 | |
19 | Rolf Backofen, Ralf Treinen: How to Win a Game with Features. Inf. Comput. 142(1): 76-101 (1998) | |
1997 | ||
18 | EE | Günter Neumann, Rolf Backofen, Judith Baur, Markus Becker, Christian Braun: An Information Extraction Core System for Real World German Text Processing. ANLP 1997: 209-216 |
17 | Rolf Backofen, Peter Clote: Evolution as a Computational Engine. CSL 1997: 35-55 | |
16 | Rolf Backofen: Using constraint programming for lattice protein folding. German Conference on Bioinformatics 1997: 123 | |
15 | EE | Günter Neumann, Rolf Backofen, Judith Baur, Markus Becker, Christian Braun: An Information Extraction Core System for Real World German Text Processing CoRR cmp-lg/9706023: (1997) |
1996 | ||
14 | Rolf Backofen: Controlling Functional Uncertainty. ECAI 1996: 557-561 | |
13 | EE | Rolf Backofen: Controlling Functional Uncertainty CoRR cmp-lg/9608002: (1996) |
1995 | ||
12 | Rolf Backofen: A Complete Axiomatization of a Theory with Feature and Arity Constraints. J. Log. Program. 24(1&2): 37-71 (1995) | |
11 | Rolf Backofen, James Rogers, K. Vijay-Shanker: A First-Order Axiomatization of the Theory of Finite Trees. Journal of Logic, Language and Information 4(1): 5-39 (1995) | |
10 | EE | Rolf Backofen, Gert Smolka: A Complete and Recursive Feature Theory. Theor. Comput. Sci. 146(1&2): 243-268 (1995) |
1994 | ||
9 | Rolf Backofen, Ralf Treinen: How to Win a Game with Features. CCL 1994: 320-335 | |
8 | EE | Hans Uszkoreit, Rolf Backofen, Stephan Busemann, Abdel Kader Diagne, Elizabeth A. Hinkelman, Walter Kasper, Bernd Kiefer, Hans-Ulrich Krieger, Klaus Netter, Günter Neumann, Stephan Oepen, Stephen P. Spackman: DISCO-An HPSG-based NLP System and its Application for Appointment Scheduling Project Note. COLING 1994: 436-440 |
7 | Rolf Backofen: Regular Path Expressions in Feature Logic. J. Symb. Comput. 17(5): 421-455 (1994) | |
1993 | ||
6 | Rolf Backofen, Gert Smolka: A Complete and Recursive Feature Theory. ACL 1993: 193-200 | |
5 | Rolf Backofen: On the Decidability of Functional Uncertainty. ACL 1993: 201-208 | |
4 | Rolf Backofen: Regular Path Expression in Feature Logic. RTA 1993: 121-135 | |
1991 | ||
3 | Rolf Backofen, Lutz Euler, Günther Görz: Distributed Disjunctions for LIFE. PDK 1991: 161-170 | |
2 | Rolf Backofen, Harald Trost, Hans Uszkoreit: Linking Typed Feature Formalisms and Terminological Knowledge Representation Languages in Natural Language Front-Ends. Wissensbasierte Systeme 1991: 375-383 | |
1990 | ||
1 | Rolf Backofen, Lutz Euler, Günther Görz: Towards the Integration of Functions, Relations and Types in an AI Programming Language. GWAI 1990: 297-306 |