Akinori Sarai

2006
24	EE	Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai: Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. APBC 2006: 227-236
23	EE	Marcos J. Araúzo-Bravo, Shandar Ahmad, Akinori Sarai: Dimensionality of amino acid space and solvent accessibility prediction with neural networks. Computational Biology and Chemistry 30(2): 160-168 (2006)
22	EE	M. D. Shaji Kumar, K. Abdulla Bava, M. Michael Gromiha, Ponraj Prabakaran, Koji Kitajima, Hatsuho Uedaira, Akinori Sarai: ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions. Nucleic Acids Research 34(Database-Issue): 204-206 (2006)
21	EE	Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai: ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. Nucleic Acids Research 34(Web-Server-Issue): 124-127 (2006)
2005
20	EE	Shandar Ahmad, Akinori Sarai: PSSM-based prediction of DNA binding sites in proteins. BMC Bioinformatics 6: 33 (2005)
19	EE	Akinori Sarai, Jorg Siebers, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono: Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism. J. Bioinformatics and Computational Biology 3(1): 169-183 (2005)
18	EE	Goran Neshich, Luiz C. Borro, Roberto H. Higa, Paula R. Kuser, Michel E. B. Yamagishi, Eduardo H. Franco, João N. Krauchenco, Renato Fileto, André A. Ribeiro, George B. P. Bezerra, Thiago M. Velludo, Tomás S. Jimenez, Noboru Furukawa, Hirofumi Teshima, Koji Kitajima, K. Abdulla Bava, Akinori Sarai, Roberto C. Togawa, Adauto L. Mancini: The Diamond STING server. Nucleic Acids Research 33(Web-Server-Issue): 29-35 (2005)
2004
17	EE	Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono: Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. APBC 2004: 233-238
16	EE	Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, Akinori Sarai: ASAView: Database and tool for solvent accessibility representation in proteins. BMC Bioinformatics 5: 51 (2004)
15	EE	Shandar Ahmad, M. Michael Gromiha, Akinori Sarai: Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. Bioinformatics 20(4): (2004)
14	EE	Alexey V. Kochetov, Akinori Sarai: Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana. Bioinformatics 20(4): (2004)
13		K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai: ProTherm, version 4.0: thermodynamic database for proteins and mutants. Nucleic Acids Research 32(Database-Issue): 120-121 (2004)
12		Shandar Ahmad, Akinori Sarai: Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins. Nucleic Acids Research 32(Web-Server-Issue): 104-107 (2004)
2003
11		Shandar Ahmad, M. Michael Gromiha, Akinori Sarai: RVP-net: online prediction of real valued accessible surface area of proteins from single sequences. Bioinformatics 19(14): 1849-1851 (2003)
2002
10		M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Ponraj Prabakaran, Akinori Sarai: ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0. Nucleic Acids Research 30(1): 301-302 (2002)
2001
9		Hideaki Mizuno, Yoshimasa Tanaka, Kenta Nakai, Akinori Sarai: ORI-GENE: gene classification based on the evolutionary tree. Bioinformatics 17(1): 167-173 (2001)
8		Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai: Thermodynamic database for protein-nucleic acid interactions (ProNIT). Bioinformatics 17(11): 1027-1034 (2001)
7		Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai: ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Research 29(1): 284-287 (2001)
6		Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai: rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. Nucleic Acids Research 29(1): 312-316 (2001)
2000
5	EE	Kenji Sayano, Hidetoshi Kono, M. Michael Gromiha, Akinori Sarai: Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction. Journal of Computational Chemistry 21(11): 954-962 (2000)
4		M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai: ProTherm, version 2.0: thermodynamic database for proteins and mutants. Nucleic Acids Research 28(1): 283-285 (2000)
1999
3		Akinori Sarai: Methods for Predicting Target Sites of Transcription Factors. German Conference on Bioinformatics 1999: 57-58
2		M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Akinori Sarai: ProTherm: Thermodynamic Database for Proteins and Mutants. Nucleic Acids Research 27(1): 286-288 (1999)
1998
1		Jianghong An, T. Nakama, Y. Kubota, Akinori Sarai: 3DinSight: an integrated relational database and search tool for the structure, function and properties of biomolecules. Bioinformatics 14(2): 188-195 (1998)

Coauthor Index

1	Shandar Ahmad	[11] [12] [15] [16] [20] [21] [23]
2	Jianghong An	[1] [2] [4] [8] [10]
3	Marcos J. Araúzo-Bravo	[21] [23] [24]
4	K. Abdulla Bava	[13] [18] [22]
5	George B. P. Bezerra	[18]
6	Luiz C. Borro	[18]
7	Hamed Fawareh	[16]
8	Renato Fileto	[18]
9	Oleg N. Fokin	[6]
10	Eduardo H. Franco	[18]
11	Anatoly S. Frolov	[6] [7]
12	Satoshi Fujii	[24]
13	Dagmara P. Furman	[7]
14	Noboru Furukawa	[18]
15	M. Michael Gromiha	[2] [4] [5] [8] [10] [11] [13] [15] [16] [17] [19] [22]
16	Roberto H. Higa	[18]
17	Tomás S. Jimenez	[18]
18	Koji Kitajima	[13] [18] [22]
19	Alexey V. Kochetov	[14]
20	Nikolay A. Kolchanov	[7]
21	Hidetoshi Kono	[2] [4] [5] [8] [17] [19] [21] [24]
22	João N. Krauchenco	[18]
23	Y. Kubota	[1]
24	M. D. Shaji Kumar	[22]
25	Paula R. Kuser	[18]
26	Sergey V. Lavryushev	[6]
27	Zoya B. Levashova	[6]
28	Adauto L. Mancini	[18]
29	Tatyana I. Merkulova	[6]
30	Hideaki Mizuno	[9]
31	Kenta Nakai	[9]
32	T. Nakama	[1]
33	Goran Neshich	[18]
34	Motohisa Oobatake	[2] [4]
35	Galina Orlova	[6] [7]
36	Nikolay L. Podkolodny	[7]
37	Julia V. Ponomarenko	[6] [7]
38	Mikhail P. Ponomarenko	[6] [7]
39	Ponraj Prabakaran	[4] [8] [10] [22]
40	André A. Ribeiro	[18]
41	Kenji Sayano	[5]
42	Samuel Selvaraj	[8] [10] [17] [19]
43	Jorg Siebers	[19]
44	Yoshimasa Tanaka	[9]
45	Hirofumi Teshima	[18]
46	Roberto C. Togawa	[18]
47	Hatsuho Uedaira	[2] [4] [8] [10] [13] [22]
48	Gennady V. Vasiliev	[6]
49	Thiago M. Velludo	[18]
50	Michel E. B. Yamagishi	[18]

Colors in the list of coauthors