Henning Hermjakob

2008
27	EE	Florian Reisinger, Manuel Corpas, John Hancock, Henning Hermjakob, Ewan Birney, Pascal Kahlem: ENFIN - An Integrative Structure for Systems Biology. DILS 2008: 132-143
26	EE	Henning Hermjakob: EBI Proteomics Services. DILS 2008: 207
25	EE	Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe Aude, Pierre Legrain, Henning Hermjakob: InteroPORC: automated inference of highly conserved protein interaction networks. Bioinformatics 24(14): 1625-1631 (2008)
24	EE	Rafael C. Jimenez, Antony F. Quinn, Alexander Garcia, Alberto Labarga, Kieran O'Neill, Fernando Martinez, Gustavo A. Salazar, Henning Hermjakob: Dasty2, an Ajax protein DAS client. Bioinformatics 24(18): 2119-2121 (2008)
23	EE	Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber: Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinformatics 24(8): 1100-1101 (2008)
22	EE	Sandra E. Orchard, Henning Hermjakob: The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world. Briefings in Bioinformatics 9(2): 166-173 (2008)
21	EE	Philip Jones, Richard G. Côté, Sang Yun Cho, Sebastian Klie, Lennart Martens, Antony F. Quinn, David Thorneycroft, Henning Hermjakob: PRIDE: new developments and new datasets. Nucleic Acids Research 36(Database-Issue): 878-883 (2008)
2007
20		Sebastian Klie, Lennart Martens, Juan Antonio Vizcaino, Richard G. Côté, Philip Jones, Rolf Apweiler, Alexander Hinneburg, Henning Hermjakob: An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. German Conference on Bioinformatics 2007: 174-184
19		Sebastian Klie, Alexander Hinneburg, Lennart Martens, Juan Antonio Vizcaino, Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob: Analysing latent topics in large-scale proteomics. LWA 2007: 73-80
18	EE	Samuel Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, Emily Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, J. Risse, K. Robbe, Bernd Roechert, David Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob: IntAct - open source resource for molecular interaction data. Nucleic Acids Research 35(Database-Issue): 561-565 (2007)
2006
17	EE	Samuel Kerrien, Henning Hermjakob: Development and implementation of the PSI MI standard for molecular interaction. Winter Simulation Conference 2006: 1587-1594
16	EE	Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob: The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics 7: 97 (2006)
15	EE	Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, Rolf Apweiler: PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Research 34(Database-Issue): 659-663 (2006)
2005
14	EE	Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler: The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. Pacific Symposium on Biocomputing 2005
13	EE	Philip Jones, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler: Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics 21(14): 3198-3199 (2005)
2004
12		Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler: IntAct: an open source molecular interaction database. Nucleic Acids Research 32(Database-Issue): 452-455 (2004)
2002
11		Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings in Bioinformatics 3(3): 225-235 (2002)
2001
10		Kai J. Runte, Henning Hermjakob, Rolf Apweiler: Towards a New Curation Environment for the TrEMBL Database. German Conference on Bioinformatics 2001: 220
9		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)
2000
8		Paul Kersey, Henning Hermjakob, Rolf Apweiler: VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. Bioinformatics 16(11): 1048-1049 (2000)
7		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)
6		Kerstin M. L. Menne, Henning Hermjakob, Rolf Apweiler: A comparison of signal sequence prediction methods using a test set of signal peptides. Bioinformatics 16(8): 741-742 (2000)
1999
5		Arno Velds, Henning Hermjakob, Rolf Apweiler: Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. German Conference on Bioinformatics 1999: 229-230
4		Henning Hermjakob, Wolfgang Fleischmann, Rolf Apweiler: Swissknife - 'lazy parsing' of SWISS-PROT entries. Bioinformatics 15(9): 771-772 (1999)
1998
3		Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler: SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. German Conference on Bioinformatics 1998
2		T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov: Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Research 26(1): 362-367 (1998)
1997
1		Henning Hermjakob, Robert Giegerich, Walter Arnold: RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. ISMB 1997: 131-139

Coauthor Index

1	Y. Alam-Faruque	[18]
2	Elena A. Ananko	[2]
3	Rolf Apweiler	[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [18] [19] [20]
4	B. Aranda	[18]
5	John Armstrong	[12]
6	Walter Arnold	[1]
7	Terri K. Attwood (Teresa K. Attwood)	[7] [9] [11]
8	Jean-Christophe Aude	[25]
9	Amos Bairoch	[7] [9] [11] [12]
10	I. Bancarz	[18]
11	Alex Bateman	[7] [9] [11]
12	David Binns	[11]
13	Ewan Birney	[7] [9] [27]
14	Margaret Biswas	[7] [9] [11]
15	Peer Bork	[11]
16	Paul Bradley	[11]
17	A. Bridge	[18]
18	Philipp Bucher	[7] [9] [11]
19	Corinne Cassier-Chauvat	[25]
20	Lorenzo Cerutti	[7] [9]
21	Gianni Cesareni	[12]
22	Franck Chauvat	[25]
23	Tony Chiang	[23]
24	Sang Yun Cho	[21]
25	Richard R. Copley	[11]
26	Manuel Corpas	[27]
27	Florence Corpet	[7] [9]
28	Richard G. Côté	[15] [16] [19] [20] [21]
29	Emmanuel Courcelle	[11]
30	Michael D. R. Croning	[7] [9]
31	William Derache	[15]
32	C. Derow	[18]
33	Emily Dimmer	[18]
34	Thomas A. Down (Thomas Down)	[13]
35	Richard Durbin	[7] [9] [11]
36	Laurent Falquet	[7] [9] [11]
37	M. Feuermann	[18]
38	Wolfgang Fleischmann	[4] [7] [9] [11]
39	A. Friedrichsen	[18]
40	Alexander Garcia	[24]
41	Robert Gentleman	[23]
42	Robert Giegerich	[1]
43	Jérôme Gouzy	[7] [9] [11]
44	Sam Griffiths-Jones	[11]
45	Andre Hackmann	[13]
46	Daniel H. Haft	[11]
47	John Hancock	[27]
48	T. Heinemeyer	[2]
49	Alexander Hinneburg	[19] [20]
50	Wolfgang Huber	[23]
51	Nicolas Hulo	[7] [9] [11]
52	R. Huntley	[18]
53	Elena V. Ignatieva	[2]
54	Rafael C. Jimenez	[24]
55	Inge Jonassen	[7] [9]
56	Philip Jones	[13] [15] [16] [19] [20] [21]
57	Andreas Kähäri	[13]
58	Pascal Kahlem	[27]
59	Daniel Kahn	[7] [9] [11]
60	Alexander Kanapin	[7] [9] [11]
61	Youla Karavidopoulou	[7] [9]
62	Alexander E. Kel	[2]
63	Olga V. Kel-Margoulis	[2]
64	Samuel Kerrien	[12] [17] [18] [23] [25]
65	Paul Kersey	[8]
66	J. Khadake	[18]
67	Sebastian Klie	[19] [20] [21]
68	C. Kohler	[18]
69	Nikolay A. Kolchanov	[2]
70	F. A. Kolpakov	[2]
71	Maria Krestyaninova	[11]
72	Ernst Kretschmann	[13]
73	Alberto Labarga	[24]
74	Fiona Lang	[3]
75	Pierre Legrain	[25]
76	C. Leroy	[18]
77	Ivica Letunic	[11]
78	Chris Lewington	[12]
79	Nianhua Li	[23]
80	A. Liban	[18]
81	C. Lieftink	[18]
82	Rodrigo Lopez	[7] [9] [11]
83	Hanah Margalit	[12]
84	Lennart Martens	[15] [19] [20] [21]
85	Maria Jesus Martin	[3]
86	Fernando Martinez	[24]
87	Beate Marx	[7] [9]
88	Kerstin M. L. Menne	[6]
89	Magali Michaut	[25]
90	Luisa Montecchi-Palazzi	[12] [14] [18] [25]
91	Sugath Mudali	[12]
92	Nicola J. Mulder	[7] [9] [11]
93	Claire O'Donovan	[3]
94	Kieran O'Neill	[24]
95	Thomas M. Oinn (Tom Oinn)	[7] [9]
96	Sandra E. Orchard	[12] [14] [18] [22] [23]
97	Sue Orchard	[11]
98	Marco Pagni	[7] [9] [11]
99	David Peyruc	[11]
100	Olga A. Podkolodnaya	[2]
101	Nikolay L. Podkolodny	[2]
102	Chris P. Ponting	[11]
103	Antony F. Quinn	[13] [15] [21] [24]
104	Florian Reisinger	[27]
105	Ingmar Reuter	[2]
106	J. Risse	[18]
107	K. Robbe	[18]
108	Bernd Roechert	[12] [18]
109	Peter Roepstorff	[12]
110	Kai J. Runte	[10]
111	Gustavo A. Salazar	[24]
112	Florence Servant	[7] [9] [11]
113	David James Sherman	[12]
114	Christian J. A. Sigrist	[7] [9] [11]
115	Chris F. Taylor	[15]
116	David Thorneycroft	[18] [21]
117	Alfonso Valencia	[12]
118	Arno Velds	[5]
119	Martin Vingron	[12]
120	Nisha Vinod	[13]
121	Juan Antonio Vizcaino	[19] [20]
122	Daniela Wieser	[13]
123	Edgar Wingender	[2]
124	Evgeni M. Zdobnov	[7] [9]
125	Y. Zhang	[18]