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Gene Myers
List of publications from the DBLP Bibliography Server - FAQ
| 2008 | ||
|---|---|---|
| 83 | EE | Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers: Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. RECOMB 2008: 128-139 |
| 82 | EE | Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers: Straightening Caenorhabditis elegans images. Bioinformatics 24(2): 234-242 (2008) |
| 2007 | ||
| 81 | EE | Hanchuan Peng, Fuhui Long, Eugene W. Myers: Straightening Worm Images. ISBI 2007: 292-295 |
| 80 | EE | Fuhui Long, Hanchuan Peng, Eugene W. Myers: Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans. ISBI 2007: 536-539 |
| 79 | EE | Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno: Computability of Models for Sequence Assembly. WABI 2007: 289-301 |
| 78 | EE | Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson: Two algorithms for LCS Consecutive Suffix Alignment. J. Comput. Syst. Sci. 73(7): 1095-1117 (2007) |
| 2006 | ||
| 77 | EE | Gene Myers: Imaging-Based Systems Biology. HiPC 2006: 5 |
| 76 | EE | Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers: Clustering gene expression patterns of fly embryos. ISBI 2006: 1144-1147 |
| 75 | EE | Tien-ho Lin, Eugene W. Myers, Eric P. Xing: Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. ISMB (Supplement of Bioinformatics) 2006: 298-306 |
| 74 | EE | Kim R. Rasmussen, Jens Stoye, Eugene W. Myers: Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. Journal of Computational Biology 13(2): 296-308 (2006) |
| 2005 | ||
| 73 | Rita Casadio, Gene Myers: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings Springer 2005 | |
| 72 | EE | Eugene W. Myers: The fragment assembly string graph. ECCB/JBI 2005: 85 |
| 71 | EE | Robert C. Edgar, Eugene W. Myers: PILER: identification and classification of genomic repeats. ISMB (Supplement of Bioinformatics) 2005: 152-158 |
| 70 | EE | Roded Sharan, Eugene W. Myers: A motif-based framework for recognizing sequence families. ISMB (Supplement of Bioinformatics) 2005: 387-393 |
| 69 | EE | Kim R. Rasmussen, Jens Stoye, Eugene W. Myers: Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. RECOMB 2005: 189-203 |
| 2004 | ||
| 68 | EE | Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson: Two Algorithms for LCS Consecutive Suffix Alignment. CPM 2004: 173-193 |
| 67 | EE | Eugene W. Myers: Whole Genome Sequencing, Comparative Genomics, and Systems Biology. CSB 2004: 4 |
| 66 | EE | Hanchuan Peng, Eugene W. Myers: Comparing in situ mRNA expression patterns of drosophila embryos. RECOMB 2004: 157-166 |
| 2003 | ||
| 65 | Gene Myers: ISMB 2003 - Editorial. ISMB (Supplement of Bioinformatics) 2003: 1-2 | |
| 64 | Gene Myers: Advances in DNA Sequencing. PCK50 2003: 9 | |
| 63 | Gene Myers, Richard Durbin: A Table-Driven, Full-Sensitivity Similarity Search Algorithm. Journal of Computational Biology 10(2): 103-118 (2003) | |
| 2002 | ||
| 62 | EE | Gene Myers: The Assembly of the Human and Mouse Genomes. COCOON 2002: 1 |
| 61 | EE | Gene Myers, Richard Durbin: Invited Lecture - Accelerating Smith-Waterman Searches. WABI 2002: 331-342 |
| 60 | EE | Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002) |
| 2001 | ||
| 59 | Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139 | |
| 58 | EE | Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163 |
| 57 | EE | Gene Myers: Comparing sequence scaffolds. RECOMB 2001: 224-230 |
| 56 | EE | Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306 |
| 2000 | ||
| 55 | EE | Gene Myers: The whole genome assembly of Drosophila. SODA 2000: 753 |
| 1999 | ||
| 54 | Gene Myers: A Whole Genome Assembler for Drosophila. German Conference on Bioinformatics 1999: 44 | |
| 53 | Gene Myers: A Dataset Generator for Whole Genome Shotgun Sequencing. ISMB 1999: 202-210 | |
| 52 | EE | Eric L. Anson, Eugene W. Myers: Algorithms for whole genome shotgun sequencing. RECOMB 1999: 1-9 |
| 51 | EE | Gene Myers: Progress toward the whole-genome shotgun sequencing of Drosophila. RECOMB 1999: 279 |
| 50 | EE | Gene Myers: A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming. J. ACM 46(3): 395-415 (1999) |
| 1998 | ||
| 49 | Gene Myers: A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming. CPM 1998: 1-13 | |
| 48 | Eugene W. Myers, Paulo Oliva, Katia S. Guimarães: Reporting Exact and Approximate Regular Expression Matches. CPM 1998: 91-103 | |
| 47 | EE | Marie-France Sagot, Eugene W. Myers: Identifying satellites in nucleic acid sequences. RECOMB 1998: 234-242 |
| 46 | Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo: Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics 14(1): 74-80 (1998) | |
| 45 | Marie-France Sagot, Eugene W. Myers: Identifying Satellites and Periodic Repetitions in Biological Sequences. Journal of Computational Biology 5(3): 539-554 (1998) | |
| 44 | Gad M. Landau, Eugene W. Myers, Jeanette P. Schmidt: Incremental String Comparison. SIAM J. Comput. 27(2): 557-582 (1998) | |
| 1997 | ||
| 43 | Stefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64 | |
| 42 | EE | Mudita Jain, Eugene W. Myers: Algorithms for computing and integrating physical maps using unique probes. RECOMB 1997: 151-161 |
| 41 | EE | Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive multiple alignment with constraints. RECOMB 1997: 220-225 |
| 40 | EE | Eric L. Anson, Eugene W. Myers: ReAligner: a program for refining DNA sequence multi-alignments. RECOMB 1997: 9-16 |
| 39 | Eric L. Anson, Eugene W. Myers: ReAligner: A Program for Refining DNA Sequence Multi-Alignments. Journal of Computational Biology 4(3): 369-384 (1997) | |
| 38 | Mudita Jain, Eugene W. Myers: Algorithms for Computing and Integrating Physical Maps Using Unique Probes. Journal of Computational Biology 4(4): 449-466 (1997) | |
| 1996 | ||
| 37 | Daniel S. Hirschberg, Eugene W. Myers: Combinatorial Pattern Matching, 7th Annual Symposium, CPM 96, Laguna Beach, California, USA, June 10-12, 1996, Proceedings Springer 1996 | |
| 36 | Sun Wu, Udi Manber, Eugene W. Myers: A Subquadratic Algorithm for Approximate Limited Expression Matching. Algorithmica 15(1): 50-67 (1996) | |
| 35 | Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive Multiple Alignment with Constraints. Journal of Computational Biology 3(4): 563-572 (1996) | |
| 34 | Sampath Kannan, Eugene W. Myers: An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score. SIAM J. Comput. 25(3): 648-662 (1996) | |
| 1995 | ||
| 33 | Gene Myers, Webb Miller: Chaining Multiple-Alignment Fragments in Sub-Quadratic Time. SODA 1995: 38-47 | |
| 32 | Eugene W. Myers: Guest Editor's Foreword: Special Issue on Computational Molecular Biology. Algorithmica 13(1/2): 1-6 (1995) | |
| 31 | James R. Knight, Eugene W. Myers: Super-Pattern Matching. Algorithmica 13(1/2): 211-243 (1995) | |
| 30 | John D. Kececioglu, Eugene W. Myers: Combinatiorial Algorithms for DNA Sequence Assembly. Algorithmica 13(1/2): 7-51 (1995) | |
| 29 | James R. Knight, Eugene W. Myers: Approximate Regular Expression Pattern Matching with Concave Gap Penalties. Algorithmica 14(1): 85-121 (1995) | |
| 28 | EE | Gene Myers: Approximately Matching Context-Free Languages. Inf. Process. Lett. 54(2): 85-92 (1995) |
| 27 | Sun Wu, Udi Manber, Eugene W. Myers: A Subquadratic Algorithm for Approximate Regular Expression Matching. J. Algorithms 19(3): 346-360 (1995) | |
| 26 | Mudita Jain, Eugene W. Myers: A Note on Scoring Clones Given a Probe Ordering. Journal of Computational Biology 2(1): 33-37 (1995) | |
| 25 | Eugene W. Myers: Toward Simplifying and Accurately Formulating Fragment Assembly. Journal of Computational Biology 2(2): 275-290 (1995) | |
| 1994 | ||
| 24 | Eugene W. Myers: A Sublinear Algorithm for Approximate Keyword Searching. Algorithmica 12(4/5): 345-374 (1994) | |
| 1993 | ||
| 23 | Sampath Kannan, Eugene W. Myers: An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score. CPM 1993: 74-86 | |
| 22 | Udi Manber, Eugene W. Myers: Suffix Arrays: A New Method for On-Line String Searches. SIAM J. Comput. 22(5): 935-948 (1993) | |
| 1992 | ||
| 21 | James R. Knight, Eugene W. Myers: Approximate Regular Expression Pattern Matching with Concave Gap Penalties. CPM 1992: 67-78 | |
| 20 | Gene Myers: Approximate Matching of Network Expressions with Spacers. LATIN 1992: 372-386 | |
| 19 | EE | Eugene W. Myers: A Four Russians Algorithm for Regular Expression Pattern Matching. J. ACM 39(2): 430-448 (1992) |
| 1990 | ||
| 18 | Udi Manber, Gene Myers: Suffix Arrays: A New Method for On-Line String Searches. SODA 1990: 319-327 | |
| 17 | Sun Wu, Udi Manber, Gene Myers, Webb Miller: An O(NP) Sequence Comparison Algorithm. Inf. Process. Lett. 35(6): 317-323 (1990) | |
| 1989 | ||
| 16 | EE | Eugene W. Myers, Webb Miller: Row Replacement Algorithms for Screen Editors. ACM Trans. Program. Lang. Syst. 11(1): 33-56 (1989) |
| 1988 | ||
| 15 | Eugene W. Myers, Webb Miller: Optimal alignments in linear space. Computer Applications in the Biosciences 4(1): 11-17 (1988) | |
| 14 | J. D. Hall, Eugene W. Myers: A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Computer Applications in the Biosciences 4(1): 35-40 (1988) | |
| 13 | Webb Miller, Eugene W. Myers: A Simple Row-replacement Method. Softw., Pract. Exper. 18(7): 597-611 (1988) | |
| 1987 | ||
| 12 | EE | Christopher W. Fraser, Eugene W. Myers: An Editor for Revision Control. ACM Trans. Program. Lang. Syst. 9(2): 277-295 (1987) |
| 1986 | ||
| 11 | Eugene W. Myers: An O(ND) Difference Algorithm and Its Variations. Algorithmica 1(2): 251-266 (1986) | |
| 10 | Eugene W. Myers, D. W. Mount: Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Research 14(1): 501-508 (1986) | |
| 9 | Webb Miller, Eugene W. Myers: Side-effects in Automatic File Updating. Softw., Pract. Exper. 16(9): 809-820 (1986) | |
| 1985 | ||
| 8 | Eugene W. Myers: An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem. SIAM J. Comput. 14(3): 625-637 (1985) | |
| 7 | Webb Miller, Eugene W. Myers: A File Comparison Program. Softw., Pract. Exper. 15(11): 1025-1040 (1985) | |
| 1984 | ||
| 6 | Eugene W. Myers: Efficient Applicative Data Types. POPL 1984: 66-75 | |
| 5 | EE | Christopher W. Fraser, Eugene W. Myers, Alan L. Wendt: Analyzing and compressing assembly code. SIGPLAN Symposium on Compiler Construction 1984: 117-121 |
| 1983 | ||
| 4 | Eugene W. Myers: An Applicative Random-Access Stack. Inf. Process. Lett. 17(5): 241-248 (1983) | |
| 1981 | ||
| 3 | Eugene W. Myers, Leon J. Osterweil: BIGMAC II: A FORTRAN Language Augmentation Tool. ICSE 1981: 410-421 | |
| 2 | Eugene W. Myers: A Precise Interprocedural Data Flow Algorithm. POPL 1981: 219-230 | |
| 1978 | ||
| 1 | Harold N. Gabow, Eugene W. Myers: Finding All Spanning Trees of Directed and Undirected Graphs. SIAM J. Comput. 7(3): 280-287 (1978) | |