2009 |
37 | EE | Dietmar Sommerfeld,
Thomas Lingner,
Mario Stanke,
Burkhard Morgenstern,
Harald Richter:
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis.
Future Generation Comp. Syst. 25(3): 337-345 (2009) |
2006 |
36 | EE | Mario Stanke,
Oliver Schöffmann,
Burkhard Morgenstern,
Stephan Waack:
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
BMC Bioinformatics 7: 62 (2006) |
35 | EE | Mario Stanke,
Oliver Keller,
Irfan Gunduz,
Alec Hayes,
Stephan Waack,
Burkhard Morgenstern:
AUGUSTUS: ab initio prediction of alternative transcripts.
Nucleic Acids Research 34(Web-Server-Issue): 435-439 (2006) |
34 | EE | Ming Zhang,
Anne-Kathrin Schultz,
Charles Calef,
Carla Kuiken,
Thomas Leitner,
Bette Korber,
Burkhard Morgenstern,
Mario Stanke:
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.
Nucleic Acids Research 34(Web-Server-Issue): 463-465 (2006) |
33 | EE | Maike Tech,
Burkhard Morgenstern,
Peter Meinicke:
TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites.
Nucleic Acids Research 34(Web-Server-Issue): 588-590 (2006) |
2005 |
32 | EE | Amarendran R. Subramanian,
Jan Weyer-Menkhoff,
Michael Kaufmann,
Burkhard Morgenstern:
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment.
BMC Bioinformatics 6: 66 (2005) |
31 | EE | Maike Tech,
Nico Pfeifer,
Burkhard Morgenstern,
Peter Meinicke:
TICO: a tool for improving predictions of prokaryotic translation initiation sites.
Bioinformatics 21(17): 3568-3569 (2005) |
30 | EE | Burkhard Morgenstern,
Nadine Werner,
Sonja J. Prohaska,
Rasmus Steinkamp,
Isabelle Schneider,
Amarendran R. Subramanian,
Peter F. Stadler,
Jan Weyer-Menkhoff:
Multiple sequence alignment with user-defined constraints at GOBICS.
Bioinformatics 21(7): 1271-1273 (2005) |
29 | EE | Mario Stanke,
Burkhard Morgenstern:
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.
Nucleic Acids Research 33(Web-Server-Issue): 465-467 (2005) |
28 | EE | Dirk Pöhler,
Nadine Werner,
Rasmus Steinkamp,
Burkhard Morgenstern:
Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.
Nucleic Acids Research 33(Web-Server-Issue): 532-534 (2005) |
2004 |
27 | | Burkhard Morgenstern,
Sonja J. Prohaska,
Nadine Werner,
Jan Weyer-Menkhoff,
Isabelle Schneider,
Amarendran R. Subramanian,
Peter F. Stadler:
Multiple sequence alignment with user-defined constraints.
German Conference on Bioinformatics 2004: 25-36 |
26 | EE | Martin Schmollinger,
Kay Nieselt,
Michael Kaufmann,
Burkhard Morgenstern:
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors.
BMC Bioinformatics 5: 128 (2004) |
25 | EE | Peter Meinicke,
Maike Tech,
Burkhard Morgenstern,
Rainer Merkl:
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites.
BMC Bioinformatics 5: 169 (2004) |
24 | | Leila Taher,
Oliver Rinner,
Saurabh Garg,
Alexander Sczyrba,
Burkhard Morgenstern:
AGenDA: gene prediction by cross-species sequence comparison.
Nucleic Acids Research 32(Web-Server-Issue): 305-308 (2004) |
23 | | Mario Stanke,
Rasmus Steinkamp,
Stephan Waack,
Burkhard Morgenstern:
AUGUSTUS: a web server for gene finding in eukaryotes.
Nucleic Acids Research 32(Web-Server-Issue): 309-312 (2004) |
22 | | Burkhard Morgenstern:
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.
Nucleic Acids Research 32(Web-Server-Issue): 33-36 (2004) |
21 | | Michael Brudno,
Rasmus Steinkamp,
Burkhard Morgenstern:
The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.
Nucleic Acids Research 32(Web-Server-Issue): 41-44 (2004) |
2003 |
20 | | Michael Sammeth,
Burkhard Morgenstern,
Jens Stoye:
Divide-and-conquer multiple alignment with segment-based constraints.
ECCB 2003: 189-195 |
19 | EE | Michael Brudno,
Michael Chapman,
Berthold Göttgens,
Serafim Batzoglou,
Burkhard Morgenstern:
Fast and sensitive multiple alignment of large genomic sequences.
BMC Bioinformatics 4: 66 (2003) |
18 | | Leila Taher,
Oliver Rinner,
Saurabh Garg,
Alexander Sczyrba,
Michael Brudno,
Serafim Batzoglou,
Burkhard Morgenstern:
AGenDA: homology-based gene prediction.
Bioinformatics 19(12): 1575-1577 (2003) |
17 | | Burkhard Morgenstern,
Sachin Goel,
Alexander Sczyrba,
Andreas W. M. Dress:
AltAVisT: Comparing alternative multiple sequence alignments.
Bioinformatics 19(3): 425-426 (2003) |
2002 |
16 | EE | Michael Brudno,
Burkhard Morgenstern:
Fast and Sensitive Alignment of Large Genomic Sequences.
CSB 2002: 138- |
15 | EE | Burkhard Morgenstern:
A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences.
Appl. Math. Lett. 15(1): 11-16 (2002) |
14 | | Burkhard Morgenstern,
Oliver Rinner,
Saïd Abdeddaïm,
Dirk Haase,
Klaus F. X. Mayer,
Andreas W. M. Dress,
Hans-Werner Mewes:
Exon discovery by genomic sequence alignment.
Bioinformatics 18(6): 777-787 (2002) |
13 | EE | Oliver Rinner,
Burkhard Morgenstern:
AGenDA: Gene prediction by comparative sequence analysis.
In Silico Biology 2: 18 (2002) |
12 | | Hans-Werner Mewes,
Dmitrij Frishman,
Ulrich Güldener,
Gertrud Mannhaupt,
Klaus F. X. Mayer,
Martin Mokrejs,
Burkhard Morgenstern,
Martin Münsterkötter,
Stephen Rudd,
B. Weil:
MIPS: a database for genomes and protein sequences.
Nucleic Acids Research 30(1): 31-34 (2002) |
2001 |
11 | | Oliver Rinner,
Burkhard Morgenstern:
Gene prediction by comparative sequence analysis.
German Conference on Bioinformatics 2001: 131-134 |
10 | | Birgitta Geier,
Gabi Kastenmüller,
Matthias Fellenberg,
Hans-Werner Mewes,
Burkhard Morgenstern:
The HIB database of annotated UniGene clusters.
Bioinformatics 17(6): 571-572 (2001) |
2000 |
9 | EE | Saïd Abdeddaïm,
Burkhard Morgenstern:
Speeding Up the DIALIGN Multiple Alignment Program by Using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB).
JOBIM 2000: 1-11 |
8 | | Burkhard Morgenstern:
A space-efficient algorithm for aligning large genomic sequences.
Bioinformatics 16(10): 948-949 (2000) |
1999 |
7 | | Hans-Peter Lenhof,
Burkhard Morgenstern,
Knut Reinert:
An exact solution for the segment-to-segment multiple sequence alignment problem.
Bioinformatics 15(3): 203-210 (1999) |
6 | | Burkhard Morgenstern:
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.
Bioinformatics 15(3): 211-218 (1999) |
1998 |
5 | | Knut Reinert,
Hans-Peter Lenhof,
Burkhard Morgenstern:
An exact solution for the Segment-to-Segment multiple sequence alignment problem.
German Conference on Bioinformatics 1998 |
4 | | Burkhard Morgenstern:
DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment.
German Conference on Bioinformatics 1998 |
3 | | Burkhard Morgenstern,
William R. Atchley,
Klaus Hahn,
Andreas W. M. Dress:
Segment-Based Scores for Pairwise and Multiple Sequence Alignments.
ISMB 1998: 115-121 |
2 | | Burkhard Morgenstern,
Kornelie Frech,
Andreas W. M. Dress,
Thomas Werner:
DIALIGN: finding local similarities by multiple sequence alignment.
Bioinformatics 14(3): 290-294 (1998) |
1997 |
1 | | Burkhard Morgenstern,
Thomas Werner:
Dialign 1.0: Multiple alignment by Segment rather than by Position comparison.
German Conference on Bioinformatics 1997: 69-71 |