Burkhard Morgenstern

2009
37	EE	Dietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter: AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis. Future Generation Comp. Syst. 25(3): 337-345 (2009)
2006
36	EE	Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack: Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7: 62 (2006)
35	EE	Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern: AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Research 34(Web-Server-Issue): 435-439 (2006)
34	EE	Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke: jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Research 34(Web-Server-Issue): 463-465 (2006)
33	EE	Maike Tech, Burkhard Morgenstern, Peter Meinicke: TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. Nucleic Acids Research 34(Web-Server-Issue): 588-590 (2006)
2005
32	EE	Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. BMC Bioinformatics 6: 66 (2005)
31	EE	Maike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke: TICO: a tool for improving predictions of prokaryotic translation initiation sites. Bioinformatics 21(17): 3568-3569 (2005)
30	EE	Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff: Multiple sequence alignment with user-defined constraints at GOBICS. Bioinformatics 21(7): 1271-1273 (2005)
29	EE	Mario Stanke, Burkhard Morgenstern: AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Research 33(Web-Server-Issue): 465-467 (2005)
28	EE	Dirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern: Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. Nucleic Acids Research 33(Web-Server-Issue): 532-534 (2005)
2004
27		Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler: Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics 2004: 25-36
26	EE	Martin Schmollinger, Kay Nieselt, Michael Kaufmann, Burkhard Morgenstern: DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors. BMC Bioinformatics 5: 128 (2004)
25	EE	Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl: Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. BMC Bioinformatics 5: 169 (2004)
24		Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Burkhard Morgenstern: AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research 32(Web-Server-Issue): 305-308 (2004)
23		Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern: AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Research 32(Web-Server-Issue): 309-312 (2004)
22		Burkhard Morgenstern: DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. Nucleic Acids Research 32(Web-Server-Issue): 33-36 (2004)
21		Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern: The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 41-44 (2004)
2003
20		Michael Sammeth, Burkhard Morgenstern, Jens Stoye: Divide-and-conquer multiple alignment with segment-based constraints. ECCB 2003: 189-195
19	EE	Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern: Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics 4: 66 (2003)
18		Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern: AGenDA: homology-based gene prediction. Bioinformatics 19(12): 1575-1577 (2003)
17		Burkhard Morgenstern, Sachin Goel, Alexander Sczyrba, Andreas W. M. Dress: AltAVisT: Comparing alternative multiple sequence alignments. Bioinformatics 19(3): 425-426 (2003)
2002
16	EE	Michael Brudno, Burkhard Morgenstern: Fast and Sensitive Alignment of Large Genomic Sequences. CSB 2002: 138-
15	EE	Burkhard Morgenstern: A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences. Appl. Math. Lett. 15(1): 11-16 (2002)
14		Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes: Exon discovery by genomic sequence alignment. Bioinformatics 18(6): 777-787 (2002)
13	EE	Oliver Rinner, Burkhard Morgenstern: AGenDA: Gene prediction by comparative sequence analysis. In Silico Biology 2: 18 (2002)
12		Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 30(1): 31-34 (2002)
2001
11		Oliver Rinner, Burkhard Morgenstern: Gene prediction by comparative sequence analysis. German Conference on Bioinformatics 2001: 131-134
10		Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern: The HIB database of annotated UniGene clusters. Bioinformatics 17(6): 571-572 (2001)
2000
9	EE	Saïd Abdeddaïm, Burkhard Morgenstern: Speeding Up the DIALIGN Multiple Alignment Program by Using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB). JOBIM 2000: 1-11
8		Burkhard Morgenstern: A space-efficient algorithm for aligning large genomic sequences. Bioinformatics 16(10): 948-949 (2000)
1999
7		Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)
6		Burkhard Morgenstern: DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15(3): 211-218 (1999)
1998
5		Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998
4		Burkhard Morgenstern: DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment. German Conference on Bioinformatics 1998
3		Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress: Segment-Based Scores for Pairwise and Multiple Sequence Alignments. ISMB 1998: 115-121
2		Burkhard Morgenstern, Kornelie Frech, Andreas W. M. Dress, Thomas Werner: DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics 14(3): 290-294 (1998)
1997
1		Burkhard Morgenstern, Thomas Werner: Dialign 1.0: Multiple alignment by Segment rather than by Position comparison. German Conference on Bioinformatics 1997: 69-71

Coauthor Index

1	Saïd Abdeddaïm	[9] [14]
2	William R. Atchley	[3]
3	Serafim Batzoglou	[18] [19]
4	Michael Brudno	[16] [18] [19] [21]
5	Charles Calef	[34]
6	Michael Chapman	[19]
7	Andreas W. M. Dress	[2] [3] [14] [17]
8	Matthias Fellenberg	[10]
9	Kornelie Frech	[2]
10	Dmitrij Frishman	[12]
11	Saurabh Garg	[18] [24]
12	Birgitta Geier	[10]
13	Sachin Goel	[17]
14	Berthold Göttgens	[19]
15	Ulrich Güldener	[12]
16	Irfan Gunduz	[35]
17	Dirk Haase	[14]
18	Klaus Hahn	[3]
19	Alec Hayes	[35]
20	Gabi Kastenmüller	[10]
21	Michael Kaufmann	[26] [32]
22	Oliver Keller	[35]
23	Bette Korber	[34]
24	Carla Kuiken	[34]
25	Thomas Leitner	[34]
26	Hans-Peter Lenhof	[5] [7]
27	Thomas Lingner	[37]
28	Gertrud Mannhaupt	[12]
29	Klaus F. X. Mayer	[12] [14]
30	Peter Meinicke	[25] [31] [33]
31	Rainer Merkl	[25]
32	Hans-Werner Mewes	[10] [12] [14]
33	Martin Mokrejs	[12]
34	Martin Münsterkötter	[12]
35	Kay Nieselt	[26]
36	Nico Pfeifer	[31]
37	Dirk Pöhler	[28]
38	Sonja J. Prohaska	[27] [30]
39	Knut Reinert	[5] [7]
40	Harald Richter	[37]
41	Oliver Rinner	[11] [13] [14] [18] [24]
42	Stephen Rudd	[12]
43	Michael Sammeth	[20]
44	Martin Schmollinger	[26]
45	Isabelle Schneider	[27] [30]
46	Oliver Schöffmann	[36]
47	Anne-Kathrin Schultz	[34]
48	Alexander Sczyrba	[17] [18] [24]
49	Dietmar Sommerfeld	[37]
50	Peter F. Stadler	[27] [30]
51	Mario Stanke	[23] [29] [34] [35] [36] [37]
52	Rasmus Steinkamp	[21] [23] [28] [30]
53	Jens Stoye	[20]
54	Amarendran R. Subramanian	[27] [30] [32]
55	Leila Taher	[18] [24]
56	Maike Tech	[25] [31] [33]
57	Stephan Waack	[23] [35] [36]
58	B. Weil	[12]
59	Nadine Werner	[27] [28] [30]
60	Thomas Werner	[1] [2]
61	Jan Weyer-Menkhoff	[27] [30] [32]
62	Ming Zhang	[34]