11. RECOMB 2007:
Oakland,
CA,
USA
Terence P. Speed, Haiyan Huang (Eds.):
Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings.
Lecture Notes in Computer Science 4453 Springer 2007, ISBN 3-540-71680-7 BibTeX
- Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan:
QNet: A Tool for Querying Protein Interaction Networks.
1-15
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- Rohit Singh, Jinbo Xu, Bonnie Berger:
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.
16-31
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- Allister Bernard, David S. Vaughn, Alexander J. Hartemink:
Reconstructing the Topology of Protein Complexes.
32-46
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- T. M. Murali, Corban G. Rivera:
Network Legos: Building Blocks of Cellular Wiring Diagrams.
47-61
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- Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli:
An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments.
62-76
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- Eilon Sharon, Eran Segal:
A Feature-Based Approach to Modeling Protein-DNA Interactions.
77-91
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- Joshua A. Grochow, Manolis Kellis:
Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking.
92-106
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- Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink:
Nucleosome Occupancy Information Improves de novo Motif Discovery.
107-121
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- Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein, Anne-Lise Børresen-Dale, Zohar Yakhini:
Framework for Identifying Common Aberrations in DNA Copy Number Data.
122-136
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- Wenyi Wang, Benilton Carvalho, Nate Miller, Jonathan Pevsner, Aravinda Chakravarti, Rafael A. Irizarry:
Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models.
137-150
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- Yanxin Shi, Fan Guo, Wei Wu, Eric P. Xing:
GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data.
151-165
Electronic Edition (link) BibTeX
- Hiroyuki Kuwahara, Chris J. Myers:
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions.
166-180
Electronic Edition (link) BibTeX
- Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic:
Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding.
181-195
Electronic Edition (link) BibTeX
- Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin:
Reconstructing the Phylogeny of Mobile Elements.
196-210
Electronic Edition (link) BibTeX
- Daniel H. Huson, Tobias H. Klöpper:
Beyond Galled Trees - Decomposition and Computation of Galled Networks.
211-225
Electronic Edition (link) BibTeX
- Ydo Wexler, Dan Geiger:
Variational Upper Bounds for Probabilistic Phylogenetic Models.
226-237
Electronic Edition (link) BibTeX
- Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe:
Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search.
238-252
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- Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Jaroslaw Pillardy:
Support Vector Training of Protein Alignment Models.
253-267
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- Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato:
Tools for Simulating and Analyzing RNA Folding Kinetics.
268-282
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- Yue Lu, Sing-Hoi Sze:
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences.
283-295
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- Joël R. Pradines, Vlado Dancík, Alan Ruttenberg, Victor Farutin:
Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data.
296-310
Electronic Edition (link) BibTeX
- Antonio Piccolboni:
Multivariate Segmentation in the Analysis of Transcription Tiling Array Data.
311-324
Electronic Edition (link) BibTeX
- Anitha Kannan, Andrew Emili, Brendan J. Frey:
A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements.
325-338
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- Michal Ozery-Flato, Ron Shamir:
Rearrangements in Genomes with Centromeres Part I: Translocations.
339-353
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- Erik Corona, Benjamin J. Raphael, Eleazar Eskin:
Identification of Deletion Polymorphisms from Haplotypes.
354-365
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- Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead:
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation.
366-380
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- Chen Yanover, Ora Schueler-Furman, Yair Weiss:
Minimizing and Learning Energy Functions for Side-Chain Prediction.
381-395
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- Anshul Nigham, David Hsu:
Protein Conformational Flexibility Analysis with Noisy Data.
396-411
Electronic Edition (link) BibTeX
- Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules.
412-429
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- Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk:
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments.
430-443
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- Marshall W. Bern, David Goldberg:
Improved Ranking Functions for Protein and Modification-Site Identifications.
444-458
Electronic Edition (link) BibTeX
- Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble:
Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions.
459-472
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- Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert:
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.
473-487
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- Yufeng Wu:
Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms.
488-502
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- Srinath Sridhar, Satish Rao, Eran Halperin:
An Efficient and Accurate Graph-Based Approach to Detect Population Substructure.
503-517
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- Wah-Heng Lee, Wing-Kin Sung:
RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints.
518-532
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- Cyrus L. Harmon, Parvez Ahammad, Ann Hammonds, Richard Weiszmann, Susan E. Celniker, Shankar Sastry, Gerald M. Rubin:
Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs.
533-547
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Copyright © Sat May 16 23:35:46 2009
by Michael Ley (ley@uni-trier.de)
