2008 |
13 | EE | Kazutaka Katoh,
Hiroyuki Toh:
Recent developments in the MAFFT multiple sequence alignment program.
Briefings in Bioinformatics 9(4): 286-298 (2008) |
2007 |
12 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Katsuhisa Horimoto,
Minoru Kanehisa,
Hiroyuki Toh:
Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
AB 2007: 322-333 |
11 | EE | Kazutaka Katoh,
Hiroyuki Toh:
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.
Bioinformatics 23(3): 372-374 (2007) |
2006 |
10 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Katsuhisa Horimoto,
Minoru Kanehisa,
Hiroyuki Toh:
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinformatics 22(20): 2488-2492 (2006) |
2005 |
9 | EE | Daron M. Standley,
Hiroyuki Toh,
Haruki Nakamura:
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures.
BMC Bioinformatics 6: 221 (2005) |
8 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Minoru Kanehisa,
Hiroyuki Toh:
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Bioinformatics 21(17): 3482-3489 (2005) |
7 | EE | Sachiyo Aburatani,
Kousuke Goto,
Shigeru Saito,
Hiroyuki Toh,
Katsuhisa Horimoto:
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.
Nucleic Acids Research 33(Web-Server-Issue): 659-664 (2005) |
2004 |
6 | EE | Sachiyo Aburatani,
Kousuke Goto,
Shigeru Saito,
Masaki Fumoto,
Akira Imaizumi,
Nobuyoshi Sugaya,
Hiroo Murakami,
Makihiko Sato,
Hiroyuki Toh,
Katsuhisa Horimoto:
ASIAN: a website for network inference.
Bioinformatics 20(16): 2853-2856 (2004) |
2003 |
5 | EE | Sachiyo Aburatani,
Satoru Kuhara,
Hiroyuki Toh,
Katsuhisa Horimoto:
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
Signal Processing 83(4): 777-788 (2003) |
2002 |
4 | | Hiroyuki Toh,
Katsuhisa Horimoto:
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.
Bioinformatics 18(2): 287-297 (2002) |
2001 |
3 | | Katsuhisa Horimoto,
Hiroyuki Toh:
Statistical estimation of cluster boundaries in gene expression profile data.
Bioinformatics 17(12): 1143-1151 (2001) |
1998 |
2 | | Katsuhisa Horimoto,
M. Suyama,
Hiroyuki Toh,
Kentaro Mori,
Jinya Otsuka:
A method for comparing circular genomes from gene locations: application to mitochondrial genomes.
Bioinformatics 14(9): 789-802 (1998) |
1997 |
1 | | Hiroyuki Toh:
Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm.
Computer Applications in the Biosciences 13(4): 387-396 (1997) |