6. APBC 2008:
Kyoto,
Japan
Alvis Brazma, Satoru Miyano, Tatsuya Akutsu (Eds.):
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, APBC 2008, 14-17 January 2008, Kyoto, Japan.
Advances in Bioinformatics and Computational Biology 6 Imperial College Press 2008, ISBN 978-1-84816-108-5 BibTeX
Keynote Papers
Contributed Papers
- Wen-Yun Yang, Bao-Liang Lu:
String Kernels with Feature Selection for SVM Protein Classification.
9-18
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- Mikael Bodén:
Predicting Nucleolar Proteins Using Support-Vector Machines.
19-28
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- Johannes Aßfalg, Jing Gong, Hans-Peter Kriegel, Alexey Pryakhin, Tiandi Wei, Arthur Zimek:
Supervised Ensembles of Prediction Methods for Subcellular Localization.
29-38
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- Aaron M. Smalter, Jun Huan, Gerald H. Lushington:
Chemical Compound Classification with Automatically Mined Structure Patterns.
39-48
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- Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Structure-Approximating Design of Stable Proteins in 2D HP Model Fortified by Cysteine Monomers.
49-58
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- Alper Küçükural, Osman Ugur Sezerman, Aytul Ercil:
Discrimination of Native Folds Using Network Properties of Protein Structures.
59-68
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- Suryani Lukman, Kelvin Sim, Jinyan Li, Yi-Ping Phoebe Chen:
Interacting Amino Acid Preferences of 3D Pattern Pairs at the Binding Sites of Transient and Obligate Protein Complexes.
69-78
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- Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, Ingolf Sommer:
Structural Descriptors of Protein-Protein Binding Sites.
79-88
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- Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu:
A Memory Efficient Algorithm for Structural Alignment of RNAs with Embedded Simple Pseudoknots.
89-100
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- Ryuichiro Nakato, Osamu Gotoh:
A Novel Method for Reducing Computational Complexity of Whole Genome Sequence Alignment.
101-110
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- Huzefa Rangwala, George Karypis:
fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information for Pairs with Low Sequence Identity.
111-122
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- Jialiang Yang, Louxin Zhang:
Run Probability of High-Order Seed Patterns and its Applications to Finding Good Transition Seeds.
123-132
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- Bin Ma, Hongyi Yao:
Seed Optimization Is No Easier than Optimal Golomb Ruler Design.
133-144
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- Melissa J. Davis, Andrew Newman, Imran Khan, Jane Hunter, Mark A. Ragan:
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions.
145-154
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- Yuan-Peng Li, Bao-Liang Lu:
Semantic Similarity Definition over Gene Ontology by Further Mining of the Information Content.
155-164
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- Jin-Dong Kim, Tomoko Ohta, Kanae Oda, Jun-ichi Tsujii:
From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature.
165-176
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- Yang Yang, Bao-Liang Lu, Wen-Yun Yang:
Classification of Protein Sequences Based on Word Segmentation Methods.
177-186
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- Jiayu Wen, Brian J. Parker, Georg F. Weiller:
Analysis of Structural Strand Asymmetry in Non-coding RNAs.
187-198
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- Huei-Hun Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo:
Finding Non-coding RNAs Through Genome-Scale Clustering.
199-210
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- Sebastian Böcker, Sebastian Briesemeister, Quang Bao Anh Bui, Anke Truß:
A Fixed-Parameter Approach for Weighted Cluster Editing.
211-220
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- Morihiro Hayashida, Tatsuya Akutsu:
Image Compression-based Approach to Measuring the Similarity of Protein Structures.
221-230
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- Robert Warren, David Sankoff:
Genome Halving with Double Cut and Join.
231-240
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- Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret:
Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes.
241-250
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- Cuong Than, Luay Nakhleh:
SPR-based Tree Reconciliation: Non-binary Trees and Multiple Solutions.
251-260
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- Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert:
Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach.
261-272
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- Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks.
273-286
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- Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, Kazuyuki Aihara:
Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks.
287-296
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- Satish Tadepalli, Naren Ramakrishnan, Layne T. Watson, Bhubaneshwar Mishra, Richard F. Helm:
Simultaneously Segmenting Multiple Gene Expression Time Courses by Analyzing Cluster Dynamics.
297-306
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- Christopher James Langmead, Sumit Kumar Jha:
Symbolic Approaches for Finding Control Strategies in Boolean Networks.
307-320
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- Dmitry A. Konovalov, Dik Heg:
Estimation of Population Allele Frequencies from Small Samples Containing Multiple Generations.
321-332
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- Zhixiang Chen, Bin Fu, Robert T. Schweller, Boting Yang, Zhiyu Zhao, Binhai Zhu:
Linear Time Probabilistic Algorithms for the Singular Haplotype Reconstruction Problem from SNP Fragments.
333-342
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- Francis Y. L. Chin, Henry C. M. Leung, Man-Hung Siu, Siu-Ming Yiu:
Optimal Algorithm for Finding DNA Motifs with Nucleotide Adjacent Dependency.
343-352
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- Bhaskar DasGupta, Jin Jun, Ion I. Mandoiu:
Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP.
353-362
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- Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole:
GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts.
363-372
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- Yannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Berube, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich:
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress.
373-382
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- Juntao Li, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy:
Near-sigmoid Modeling to Simultaneously Profile Genome-wide DNA Replication Timing and Efficiency in Single DNA Replication Microarray Studies.
383-392
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Copyright © Sat May 16 22:58:02 2009
by Michael Ley (ley@uni-trier.de)
