David Botstein

2008
20	EE	Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen R. Christie, Julie Park, Gail Binkley, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu, Kara Dolinski, David Botstein, J. Michael Cherry: Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Research 36(Database-Issue): 577-581 (2008)
2007
19	EE	Robert S. Nash, Shuai Weng, Benjamin C. Hitz, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Michael S. Livstone, Rose Oughtred, Julie Park, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Kara Dolinski, David Botstein, J. Michael Cherry: Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Research 35(Database-Issue): 468-471 (2007)
2006
18	EE	Jodi E. Hirschman, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Michael S. Livstone, Robert S. Nash, Julie Park, Rose Oughtred, Marek S. Skrzypek, Barry Starr, Chandra L. Theesfeld, Jennifer Williams, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Mayank K. Thanawala, Shuai Weng, Kara Dolinski, David Botstein, J. Michael Cherry: Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Research 34(Database-Issue): 442-445 (2006)
2005
17	EE	Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry: Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Research 33(Database-Issue): 374-377 (2005)
2004
16	EE	Christian A. Rees, Janos Demeter, John C. Matese, David Botstein, Gavin Sherlock: GeneXplorer: an interactive web application for microarray data visualization and analysis. BMC Bioinformatics 5: 141 (2004)
15	EE	Elizabeth I. Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, J. Michael Cherry, Gavin Sherlock: GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20(18): 3710-3715 (2004)
14		Selina S. Dwight, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, Shuai Weng, David Botstein, J. Michael Cherry: Saccharomyces genome database: Underlying principles and organisation. Briefings in Bioinformatics 5(1): 9-22 (2004)
13		Karen R. Christie, Shuai Weng, Rama Balakrishnan, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Research 32(Database-Issue): 311-314 (2004)
2003
12	EE	Qing Dong, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Shuai Weng, David Botstein, J. Michael Cherry: Gene Function, Metabolic Pathways and Comparative Genomics in Yeast. CSB 2003: 437-438
11		Shuai Weng, Qing Dong, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Research 31(1): 216-218 (2003)
10		Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Michael Cherry, David Botstein, Patrick O. Brown, Ash A. Alizadeh: SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Nucleic Acids Research 31(1): 219-223 (2003)
9		Jeremy Gollub, Catherine A. Ball, Gail Binkley, Janos Demeter, David B. Finkelstein, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, Miroslava Kaloper, John C. Matese, Mark Schroeder, Patrick O. Brown, David Botstein, Gavin Sherlock: The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Research 31(1): 94-96 (2003)
2002
8		Olga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, Russ B. Altman: Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics 18(11): 1454-1461 (2002)
7		Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Research 30(1): 69-72 (2002)
2001
6		Olga G. Troyanskaya, Michael Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman: Missing value estimation methods for DNA microarrays. Bioinformatics 17(6): 520-525 (2001)
5		Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry: The Stanford Microarray Database. Nucleic Acids Research 29(1): 152-155 (2001)
4		Catherine A. Ball, Heng Jin, Gavin Sherlock, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Research 29(1): 80-81 (2001)
2000
3		Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng Jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry: Integrating functional genomic information into the Saccharomyces Genome Database. Nucleic Acids Research 28(1): 77-80 (2000)
1999
2		Stephen A. Chervitz, Erich T. Hester, Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Gail Juvik, Alice Malekian, Shannon Roberts, TaiYun Roe, Charles R. Scafe, Mark Schroeder, Gavin Sherlock, Shuai Weng, Yan Zhu, J. Michael Cherry, David Botstein: Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. Nucleic Acids Research 27(1): 74-78 (1999)
1998
1		J. Michael Cherry, Caroline Adler, Catherine A. Ball, Stephen A. Chervitz, Selina S. Dwight, Erich T. Hester, Yankai Jia, Gail Juvik, TaiYun Roe, Mark Schroeder, Shuai Weng, David Botstein: SGD: Saccharomyces Genome Database. Nucleic Acids Research 26(1): 73-79 (1998)

Coauthor Index

1	Caroline Adler	[1]
2	Ash A. Alizadeh	[10]
3	Russ B. Altman	[6] [8]
4	Rey Andrada	[4] [11] [13] [14] [18]
5	Rama Balakrishnan	[11] [12] [13] [14] [17] [18] [19] [20]
6	Catherine A. Ball	[1] [2] [3] [4] [5] [7] [9]
7	Gail Binkley	[3] [4] [5] [7] [9] [10] [11] [12] [13] [14] [17] [18] [19] [20]
8	Elizabeth I. Boyle	[15]
9	Patrick O. Brown	[5] [6] [8] [9] [10]
10	Michael Cantor	[6]
11	J. Michael Cherry	[1] [2] [3] [4] [5] [7] [10] [11] [12] [13] [14] [15] [17] [18] [19] [20]
12	Stephen A. Chervitz	[1] [2]
13	Karen R. Christie	[7] [11] [12] [13] [14] [17] [18] [19] [20]
14	Maria C. Costanzo	[11] [12] [13] [14] [17] [18] [19] [20]
15	Janos Demeter	[9] [16]
16	Maximilian Diehn	[10]
17	Kara Dolinski	[2] [3] [4] [7] [11] [12] [13] [14] [17] [18] [19] [20]
18	Qing Dong	[11] [12] [13] [14] [17] [18] [19] [20]
19	Selina S. Dwight	[1] [2] [3] [4] [5] [7] [11] [12] [13] [14] [17] [18] [19] [20]
20	Michael B. Eisen	[5]
21	Stacia R. Engel	[11] [12] [13] [14] [17] [18] [19] [20]
22	Becket Feierbach	[13] [14]
23	David B. Finkelstein	[9]
24	Dianna G. Fisk	[7] [11] [12] [13] [14] [17] [18] [19] [20]
25	Mitchell E. Garber	[8]
26	Jeremy Gollub	[9] [15]
27	Midori A. Harris	[2] [3] [4] [7]
28	Trevor Hastie	[6]
29	Joan M. Hebert	[9]
30	Tina Hernandez-Boussard	[5] [9] [10]
31	Erich T. Hester	[1] [2]
32	Jodi E. Hirschman	[12] [13] [14] [17] [18] [19] [20]
33	Benjamin C. Hitz	[19] [20]
34	Eurie L. Hong	[11] [12] [13] [14] [17] [18] [19] [20]
35	Laurie Issel-Tarver	[3] [4] [7] [11] [12] [13] [14]
36	Yankai Jia	[1]
37	Heng Jin	[3] [4] [5] [9] [10] [15]
38	Gail Juvik	[1] [2]
39	Miroslava Kaloper	[3] [5] [9]
40	Andrew Kasarskis	[3] [5]
41	Cynthia J. Krieger	[20]
42	Christopher Lane	[11] [13] [14] [17] [18] [19]
43	Michael S. Livstone	[18] [19] [20]
44	Alice Malekian	[2]
45	John C. Matese	[4] [5] [9] [10] [16]
46	Stuart R. Miyasato	[18] [19] [20]
47	Robert S. Nash	[12] [13] [14] [17] [18] [19] [20]
48	Sidney D. Orr	[3]
49	Rose Oughtred	[17] [18] [19] [20]
50	Julie Park	[18] [19] [20]
51	Christian A. Rees	[10] [16]
52	Shannon Roberts	[2]
53	TaiYun Roe	[1] [2]
54	Charles R. Scafe	[2] [3]
55	Mark Schroeder	[1] [2] [3] [4] [7] [9] [11] [13] [14] [18] [19]
56	Anand Sethuraman	[7] [11] [12] [13] [14] [17] [18] [19]
57	Gavin Sherlock	[2] [3] [4] [5] [6] [7] [9] [10] [15] [16]
58	Marek S. Skrzypek	[17] [18] [19] [20]
59	Paul T. Spellman	[5]
60	Barry Starr	[13] [14] [18]
61	Mayank K. Thanawala	[18]
62	Chandra L. Theesfeld	[11] [12] [13] [14] [17] [18] [19]
63	Robert Tibshirani	[6]
64	Olga G. Troyanskaya	[6] [8]
65	Shuai Weng	[1] [2] [3] [4] [5] [7] [11] [12] [13] [14] [15] [17] [18] [19] [20]
66	Jennifer Williams	[18]
67	Edith D. Wong	[20]
68	Kathy K. Zhu	[20]
69	Yan Zhu	[2] [3]