Gavin Sherlock

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2008
19	EE	Robert J. Marinelli, Kelli Montgomery, Chih Long Liu, Nigam H. Shah, Wijan Prapong, Michael Nitzberg, Zachariah K. Zachariah, Gavin Sherlock, Yasodha Natkunam, Robert B. West, Matt van de Rijn, Patrick O. Brown, Catherine A. Ball: The Stanford Tissue Microarray Database. Nucleic Acids Research 36(Database-Issue): 871-877 (2008)
2007
18	EE	Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Prachi Shah, Gail Binkley, Christopher Lane, Stuart R. Miyasato, Gavin Sherlock: Sequence resources at the Candida Genome Database. Nucleic Acids Research 35(Database-Issue): 452-456 (2007)
17	EE	Janos Demeter, Catherine Beauheim, Jeremy Gollub, Tina Hernandez-Boussard, Heng Jin, Donald Maier, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock, Catherine A. Ball: The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Nucleic Acids Research 35(Database-Issue): 766-770 (2007)
2005
16	EE	Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Gail Binkley, Christopher Lane, Stuart R. Miyasato, Gavin Sherlock: The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information. Nucleic Acids Research 33(Database-Issue): 358-363 (2005)
15	EE	Catherine A. Ball, Ihab A. B. Awad, Janos Demeter, Jeremy Gollub, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock: The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Research 33(Database-Issue): 580-582 (2005)
2004
14	EE	Christian A. Rees, Janos Demeter, John C. Matese, David Botstein, Gavin Sherlock: GeneXplorer: an interactive web application for microarray data visualization and analysis. BMC Bioinformatics 5: 141 (2004)
13	EE	Ihab A. B. Awad, Christian A. Rees, Tina Hernandez-Boussard, Catherine A. Ball, Gavin Sherlock: Caryoscope: An Open Source Java application for viewing microarray data in a genomic context. BMC Bioinformatics 5: 151 (2004)
12	EE	Elizabeth I. Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, J. Michael Cherry, Gavin Sherlock: GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20(18): 3710-3715 (2004)
2003
11	EE	Patrick J. Killion, Gavin Sherlock, Vishwanath R. Iyer: The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD). BMC Bioinformatics 4: 32 (2003)
10		Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Michael Cherry, David Botstein, Patrick O. Brown, Ash A. Alizadeh: SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Nucleic Acids Research 31(1): 219-223 (2003)
9		Jeremy Gollub, Catherine A. Ball, Gail Binkley, Janos Demeter, David B. Finkelstein, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, Miroslava Kaloper, John C. Matese, Mark Schroeder, Patrick O. Brown, David Botstein, Gavin Sherlock: The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Research 31(1): 94-96 (2003)
2002
8		Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
7		Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Research 30(1): 69-72 (2002)
2001
6		Olga G. Troyanskaya, Michael Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman: Missing value estimation methods for DNA microarrays. Bioinformatics 17(6): 520-525 (2001)
5		Gavin Sherlock: Analysis of Large-scale Gene Expression Data. Briefings in Bioinformatics 2(4): 350-362 (2001)
4		Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry: The Stanford Microarray Database. Nucleic Acids Research 29(1): 152-155 (2001)
3		Catherine A. Ball, Heng Jin, Gavin Sherlock, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Research 29(1): 80-81 (2001)
2000
2		Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng Jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry: Integrating functional genomic information into the Saccharomyces Genome Database. Nucleic Acids Research 28(1): 77-80 (2000)
1999
1		Stephen A. Chervitz, Erich T. Hester, Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Gail Juvik, Alice Malekian, Shannon Roberts, TaiYun Roe, Charles R. Scafe, Mark Schroeder, Gavin Sherlock, Shuai Weng, Yan Zhu, J. Michael Cherry, David Botstein: Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. Nucleic Acids Research 27(1): 74-78 (1999)

Coauthor Index

1 Ash A. Alizadeh [10]

2 Russ B. Altman [6]

3 Rey Andrada [3]

4 Martha B. Arnaud [16] [18]

5 Ihab A. B. Awad [13] [15]

6 Catherine A. Ball [1] [2] [3] [4] [7] [8] [9] [13] [15] [17] [19]

7 Catherine Beauheim [17]

8 Gail Binkley [2] [3] [4] [7] [9] [10] [16] [18]

9 David Botstein [1] [2] [3] [4] [6] [7] [9] [10] [12] [14]

10 Elizabeth I. Boyle [12]

11 Alvis Brazma [8]

12 Catherine Brooksbank [8]

13 Patrick O. Brown [4] [6] [9] [10] [15] [17] [19]

14 Michael Cantor [6]

15 Helen C. Causton [8]

16 Duccio Cavalieri [8]

17 J. Michael Cherry [1] [2] [3] [4] [7] [10] [12]

18 Stephen A. Chervitz [1]

19 Karen R. Christie [7]

20 Maria C. Costanzo [16] [18]

21 Janos Demeter [9] [14] [15] [17]

22 Maximilian Diehn [10]

23 Kara Dolinski [1] [2] [3] [7]

24 Selina S. Dwight [1] [2] [3] [4] [7]

25 Michael B. Eisen [4]

26 David B. Finkelstein [9]

27 Dianna G. Fisk [7]

28 Terry Gaasterland [8]

29 Jeremy Gollub [9] [12] [15] [17]

30 Midori A. Harris [1] [2] [3] [7]

31 Trevor Hastie [6]

32 Joan M. Hebert [9] [15]

33 Tina Hernandez-Boussard [4] [9] [10] [13] [15] [17]

34 Erich T. Hester [1]

35 Pascal Hingamp [8]

36 Frank Holstege [8]

37 Laurie Issel-Tarver [2] [3] [7]

38 Vishwanath R. Iyer [11]

39 Heng Jin [2] [3] [4] [9] [10] [12] [15] [17]

40 Gail Juvik [1]

41 Miroslava Kaloper [2] [4] [9]

42 Andrew Kasarskis [2] [4]

43 Patrick J. Killion [11]

44 Christopher Lane [16] [18]

45 Chih Long Liu [19]

46 Donald Maier [17]

47 Alice Malekian [1]

48 Robert J. Marinelli [19]

49 John C. Matese [3] [4] [9] [10] [14] [15] [17]

50 Stuart R. Miyasato [16] [18]

51 Kelli Montgomery [19]

52 Yasodha Natkunam [19]

53 Michael Nitzberg [15] [17] [19]

54 Sidney D. Orr [2]

55 Helen E. Parkinson [8]

56 Wijan Prapong [19]

57 John Quackenbush [8]

58 Christian A. Rees [10] [13] [14]

59 Matt van de Rijn [19]

60 Martin Ringwald [8]

61 Shannon Roberts [1]

62 Philippe Rocca-Serra [8]

63 TaiYun Roe [1]

64 Charles R. Scafe [1] [2]

65 Mark Schroeder [1] [2] [3] [7] [9]

66 Anand Sethuraman [7]

67 Nigam H. Shah [19]

68 Prachi Shah [18]

69 Marek S. Skrzypek [16] [18]

70 Paul T. Spellman [4] [8]

71 Jason E. Stewart [8]

72 Christian J. Stoeckert Jr. [8]

73 Ronald Taylor [8]

74 Robert Tibshirani [6]

75 Olga G. Troyanskaya [6]

76 Shuai Weng [1] [2] [3] [4] [7] [12]

77 Robert B. West [19]

78 Farrell Wymore [15] [17]

79 Zachariah K. Zachariah [15] [17] [19]

80 Yan Zhu [1] [2]

Colors in the list of coauthors

1	Ash A. Alizadeh	[10]
2	Russ B. Altman	[6]
3	Rey Andrada	[3]
4	Martha B. Arnaud	[16] [18]
5	Ihab A. B. Awad	[13] [15]
6	Catherine A. Ball	[1] [2] [3] [4] [7] [8] [9] [13] [15] [17] [19]
7	Catherine Beauheim	[17]
8	Gail Binkley	[2] [3] [4] [7] [9] [10] [16] [18]
9	David Botstein	[1] [2] [3] [4] [6] [7] [9] [10] [12] [14]
10	Elizabeth I. Boyle	[12]
11	Alvis Brazma	[8]
12	Catherine Brooksbank	[8]
13	Patrick O. Brown	[4] [6] [9] [10] [15] [17] [19]
14	Michael Cantor	[6]
15	Helen C. Causton	[8]
16	Duccio Cavalieri	[8]
17	J. Michael Cherry	[1] [2] [3] [4] [7] [10] [12]
18	Stephen A. Chervitz	[1]
19	Karen R. Christie	[7]
20	Maria C. Costanzo	[16] [18]
21	Janos Demeter	[9] [14] [15] [17]
22	Maximilian Diehn	[10]
23	Kara Dolinski	[1] [2] [3] [7]
24	Selina S. Dwight	[1] [2] [3] [4] [7]
25	Michael B. Eisen	[4]
26	David B. Finkelstein	[9]
27	Dianna G. Fisk	[7]
28	Terry Gaasterland	[8]
29	Jeremy Gollub	[9] [12] [15] [17]
30	Midori A. Harris	[1] [2] [3] [7]
31	Trevor Hastie	[6]
32	Joan M. Hebert	[9] [15]
33	Tina Hernandez-Boussard	[4] [9] [10] [13] [15] [17]
34	Erich T. Hester	[1]
35	Pascal Hingamp	[8]
36	Frank Holstege	[8]
37	Laurie Issel-Tarver	[2] [3] [7]
38	Vishwanath R. Iyer	[11]
39	Heng Jin	[2] [3] [4] [9] [10] [12] [15] [17]
40	Gail Juvik	[1]
41	Miroslava Kaloper	[2] [4] [9]
42	Andrew Kasarskis	[2] [4]
43	Patrick J. Killion	[11]
44	Christopher Lane	[16] [18]
45	Chih Long Liu	[19]
46	Donald Maier	[17]
47	Alice Malekian	[1]
48	Robert J. Marinelli	[19]
49	John C. Matese	[3] [4] [9] [10] [14] [15] [17]
50	Stuart R. Miyasato	[16] [18]
51	Kelli Montgomery	[19]
52	Yasodha Natkunam	[19]
53	Michael Nitzberg	[15] [17] [19]
54	Sidney D. Orr	[2]
55	Helen E. Parkinson	[8]
56	Wijan Prapong	[19]
57	John Quackenbush	[8]
58	Christian A. Rees	[10] [13] [14]
59	Matt van de Rijn	[19]
60	Martin Ringwald	[8]
61	Shannon Roberts	[1]
62	Philippe Rocca-Serra	[8]
63	TaiYun Roe	[1]
64	Charles R. Scafe	[1] [2]
65	Mark Schroeder	[1] [2] [3] [7] [9]
66	Anand Sethuraman	[7]
67	Nigam H. Shah	[19]
68	Prachi Shah	[18]
69	Marek S. Skrzypek	[16] [18]
70	Paul T. Spellman	[4] [8]
71	Jason E. Stewart	[8]
72	Christian J. Stoeckert Jr.	[8]
73	Ronald Taylor	[8]
74	Robert Tibshirani	[6]
75	Olga G. Troyanskaya	[6]
76	Shuai Weng	[1] [2] [3] [4] [7] [12]
77	Robert B. West	[19]
78	Farrell Wymore	[15] [17]
79	Zachariah K. Zachariah	[15] [17] [19]
80	Yan Zhu	[1] [2]