Volume 9,
Number 1,
January 2008
- Wentian Li:
Three lectures on case-control genetic association analysis.
1-13
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- Martin Yuille, Gert-Jan van Ommen, Christian Bréchot, Anne Cambon-Thomsen, Georges Dagher, Ulf Landegren, Jan-Eric Litton, Markus Pasterk, Leena Peltonen, Mike Taussig, H.-Erich Wichmann, Kurt Zatloukal:
Biobanking for Europe.
14-24
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- Jose M. Arteaga-Salas, Harry Zuzan, William B. Langdon, Graham J. G. Upton, Andrew P. Harrison:
An overview of image-processing methods for Affymetrix GeneChips.
25-33
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- Matteo Brilli, Renato Fani, Pietro Liò:
Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes.
34-45
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- David S. Horner, Walter Pirovano, Graziano Pesole:
Correlated substitution analysis and the prediction of amino acid structural contacts.
46-56
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- Paolo Romano:
Automation of in-silico data analysis processes through workflow management systems.
57-68
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- Sean D. Mooney, Peter H. Baenziger:
Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group.
69-74
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- Daniel L. Rubin, Nigam Shah, Natalya Fridman Noy:
Biomedical ontologies: a functional perspective.
75-90
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Book reviews
Volume 9,
Number 2,
March 2008
Special Issue:
Computational Proteomics
Papers
- Melanie Hilario, Alexandros Kalousis:
Approaches to dimensionality reduction in proteomic biomarker studies.
102-118
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- Annalisa Barla, Giuseppe Jurman, Samantha Riccadonna, Stefano Merler, Marco Chierici, Cesare Furlanello:
Machine learning methods for predictive proteomics.
119-128
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- Thomas Villmann, Frank-Michael Schleif, Markus Kostrzewa, Axel Walch, Barbara Hammer:
Classification of mass-spectrometric data in clinical proteomics using learning vector quantization methods.
129-143
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- Pierangelo Veltri:
Algorithms and tools for analysis and management of mass spectrometry data.
144-155
Electronic Edition (link) BibTeX
- Jason W. H. Wong, Matthew J. Sullivan, Gerard Cagney:
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.
156-165
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- Sandra E. Orchard, Henning Hermjakob:
The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world.
166-173
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Software Review
Volume 9,
Number 3,
May 2008
- Dougu Nam, Seon-Young Kim:
Gene-set approach for expression pattern analysis.
189-197
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- Paolo Sonego, András Kocsor, Sándor Pongor:
ROC analysis: applications to the classification of biological sequences and 3D structures.
198-209
Electronic Edition (link) BibTeX
- Stephen John Sammut, Robert D. Finn, Alex Bateman:
Pfam 10 years on: 10 000 families and still growing.
210-219
Electronic Edition (link) BibTeX
- Interoperability with Moby 1.0 - It's better than sharing your toothbrush!
220-231
Electronic Edition (link) BibTeX
- Ina Koch, Georg Fuellen:
A review of bioinformatics education in Germany.
232-242
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- Alexander Sczyrba, Susanne Konermann, Robert Giegerich:
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server.
243-249
Electronic Edition (link) BibTeX
- Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron:
The BREW workshop series: a stimulating experience in PhD education.
250-253
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Book Reviews
Volume 9,
Number 4,
July 2008
Special Issue:
Critical Technologies for Bioinformatics
- Vladimir Brusic, Shoba Ranganathan:
Critical technologies for bioinformatics.
261-262
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- Marie-Paule Lefranc, Véronique Giudicelli, Laetitia Regnier, Patrice Duroux:
IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics.
263-275
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- Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura:
Protein structure databases with new web services for structural biology and biomedical research.
276-285
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- Kazutaka Katoh, Hiroyuki Toh:
Recent developments in the MAFFT multiple sequence alignment program.
286-298
Electronic Edition (link) BibTeX
- Sudhir Kumar, Masatoshi Nei, Joel Dudley, Koichiro Tamura:
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences.
299-306
Electronic Edition (link) BibTeX
- Gary B. Fogel:
Computational intelligence approaches for pattern discovery in biological systems.
307-316
Electronic Edition (link) BibTeX
- Zhenjun Hu, Evan S. Snitkin, Charles DeLisi:
VisANT: an integrative framework for networks in systems biology.
317-325
Electronic Edition (link) BibTeX
- Edgar Wingender:
The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.
326-332
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- Peter J. Hunter, Edmund J. Crampin, Poul M. F. Nielsen:
Bioinformatics, multiscale modeling and the IUPS Physiome Project.
333-343
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Volume 9,
Number 5,
September 2008
- Roderic D. M. Page:
Biodiversity informatics: the challenge of linking data and the role of shared identifiers.
345-354
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- Angelika Merkel, Neil Gemmell:
Detecting short tandem repeats from genome data: opening the software black box.
355-366
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- Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F. T. van Hijum:
The relative value of operon predictions.
367-375
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- Natalia V. Sernova, Mikhail S. Gelfand:
Identification of replication origins in prokaryotic genomes.
376-391
Electronic Edition (link) BibTeX
- Shuangge Ma, Jian Huang:
Penalized feature selection and classification in bioinformatics.
392-403
Electronic Edition (link) BibTeX
- Rainer Breitling, David Gilbert, Monika Heiner, Richard J. Orton:
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.
404-421
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- Francisco J. Planes, John E. Beasley:
A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
422-436
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- Lorenzo Dematté, Corrado Priami, Alessandro Romanel:
The Beta Workbench: a computational tool to study the dynamics of biological systems.
437-449
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Erratum
Copyright © Sat May 16 23:51:23 2009
by Michael Ley (ley@uni-trier.de)
