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Alvis Brazma

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2008
38 Alvis Brazma, Satoru Miyano, Tatsuya Akutsu: Proceedings of the 6th Asia-Pacific Bioinformatics Conference, APBC 2008, 14-17 January 2008, Kyoto, Japan Imperial College Press 2008
37EEYannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Berube, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich: Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. APBC 2008: 373-382
36EEAlvis Brazma, Satoru Miyano, Tatsuya Akutsu: Preface. APBC 2008
35EERobert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron: The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 9(3): 250-253 (2008)
34EEYannick Haudry, Hugo Berube, Ivica Letunic, Paul-Daniel Weeber, Julien Gagneur, Charles Girardot, Misha Kapushesky, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich: 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research 36(Database-Issue): 847-853 (2008)
2007
33EEHelen E. Parkinson, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, R. Coulson, Anna Farne, Ele Holloway, N. Kolesnykov, P. Lilja, M. Lukk, R. Mani, Tim Rayner, Anjan Sharma, E. William, Ugis Sarkans, Alvis Brazma: ArrayExpress - a public database of microarray experiments and gene expression profiles. Nucleic Acids Research 35(Database-Issue): 747-750 (2007)
2006
32EEJonathon Blake, Christian Schwager, Misha Kapushesky, Alvis Brazma: ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression. Bioinformatics 22(6): 765-767 (2006)
2005
31EEWalter R. Gilks, Brian D. M. Tom, Alvis Brazma: Fusing microarray experiments with multivariate regression. ECCB/JBI 2005: 143
30EESteffen Durinck, Yves Moreau, Arek Kasprzyk, Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber: BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 21(16): 3439-3440 (2005)
29EEAurora Torrente, Misha Kapushesky, Alvis Brazma: A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings. Bioinformatics 21(21): 3993-3999 (2005)
28EEUgis Sarkans, Helen E. Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim Rayner, Alvis Brazma: The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinformatics 21(8): 1495-1501 (2005)
27EEHelen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino, R. Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim Rayner, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, Alvis Brazma: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 33(Database-Issue): 553-555 (2005)
2004
26 Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma: Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Research 32(Web-Server-Issue): 465-470 (2004)
2003
25 Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron: The European Bioinformatics Institute's data resources. Nucleic Acids Research 31(1): 43-50 (2003)
24 Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 31(1): 68-71 (2003)
2002
23 Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo: Correlating gene promoters and expression in gene disruption experiments. ECCB 2002: 172-180
22 J. Rung, T. Schlitt, Alvis Brazma, K. Freivalds, Jaak Vilo: Building and analysing genome-wide gene disruption networks. ECCB 2002: 202-210
21 Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
2001
20 Alvis Brazma: On the Importance of Standardisation in Life Sciences. Bioinformatics 17(1): 113-114 (2001)
2000
19 Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen: Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. ISMB 2000: 384-394
1998
18 Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen: Predicting gene regulatory elements from their expression data in the complete yeast genome. German Conference on Bioinformatics 1998
17EEAlvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen: Pattern Discovery in Biosequences. ICGI 1998: 257-270
16 Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David Gilbert: Approaches to the Automatic Discovery of Patterns in Biosequences. Journal of Computational Biology 5(2): 277-304 (1998)
1997
15 Alvis Brazma, Tomas P. Flores, Peter Maccallum, Alan J. Robinson: Data Mining and Visualisation in Molecular Biology Databases. German Conference on Bioinformatics 1997: 127
14 Alvis Brazma, Jaak Vilo, Esko Ukkonen: Finding transcription factor binding site combinations in the yeast genome. German Conference on Bioinformatics 1997: 57-59
13 Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen: Data Mining for Regulatory Elements in Yeast Genome. ISMB 1997: 65-74
12 Alvis Brazma, Karlis Cerans: Noise-Tolerant Efficient Inductive Synthesis of Regular Expressions from Good Examples. New Generation Comput. 15(1): 105-140 (1997)
1996
11 Alvis Brazma, Esko Ukkonen, Jaak Vilo: Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract). ISAAC 1996: 95-104
10 Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo: Discovering Patterns and Subfamilies in Biosequences. ISMB 1996: 34-43
1995
9 Alvis Brazma: Learning of regular expressions by pattern matching. EuroCOLT 1995: 392-403
1994
8 Alvis Brazma: Efficient Algorithm for Learning Simple Regular Expressions from Noisy Examples. AII/ALT 1994: 260-271
7 Alvis Brazma, Karlis Cerans: Efficient Learning of Regular Expressions from Good Examples. AII/ALT 1994: 76-90
6 Karlis Kaugars, Juris Reinfelds, Alvis Brazma: A Simple Algorithm for Drawing Large Graphs on Small Screens. Graph Drawing 1994: 278-281
1993
5EEAlvis Brazma: Efficient Identification of Regular Expressions from Representative Examples. COLT 1993: 236-242
4 Alvis Brazma: Learning a Subclass of Regular Expressions by Recognizing Periodic Repetitions. SCAI 1993: 137-146
1991
3 Alvis Brazma: Inductive Synthesis of Dot Expressions. Baltic Computer Science 1991: 156-212
1990
2 Efim B. Kinber, Alvis Brazma: Models of Inductive Synthesis. J. Log. Program. 9(2&3): 221-233 (1990)
1986
1 Alvis Brazma, Efim B. Kinber: Generalized Regular Expressions-A Language for Synthesis of Programs with Braching in Loops. Theor. Comput. Sci. 46(3): 175-195 (1986)

Coauthor Index

1Niran Abeygunawardena [24] [27] [28] [33]
2Tatsuya Akutsu [36] [38]
3Rolf Apweiler [25]
4Detlev Arendt [34] [37]
5Catherine A. Ball [21]
6Hugo Berube [34] [37]
7Ewan Birney [25]
8Jonathon Blake [32]
9Peer Bork [34] [37]
10Catherine Brooksbank [21] [25]
11Graham Cameron [25]
12Evelyn Camon [25]
13Helen C. Causton [21]
14Duccio Cavalieri [21]
15Karlis Cerans [7] [12]
16Sergio Contrino [27] [28]
17R. Coulson [27] [33]
18Aedín C. Culhane [26]
19Sean Davis [30]
20Steffen Durinck [26] [30]
21Ingvar Eidhammer [16]
22Laurence Ettwiller [37]
23Anna Farne [27] [28] [33]
24Tomas P. Flores [15]
25K. Freivalds [22]
26Eileen E. M. Furlong [34] [37]
27Terry Gaasterland [21]
28Julien Gagneur [34] [37]
29Robert Giegerich [35]
30David Gilbert (David R. Gilbert) [16]
31Walter R. Gilks [31]
32Charles Girardot [34] [37]
33Midori A. Harris [25]
34Yannick Haudry [34] [37]
35Thorsten Henrich [34] [37]
36Kim Henrick [25]
37Pascal Hingamp [21]
38Ele Holloway [24] [27] [28] [33]
39Frank Holstege [21]
40Wolfgang Huber [30]
41Jan Ihmels [26]
42Inge Jonassen [10] [16] [17] [18] [19] [35]
43Misha Kapushesky [24] [26] [27] [28] [29] [32] [33] [34] [37]
44Arek Kasprzyk [30]
45Karlis Kaugars [6]
46Patrick Kemmeren [24] [26]
47Efim B. Kinber [1] [2]
48N. Kolesnykov [33]
49Christine Körner [26]
50Meelis Kull [26]
51Gonzalo Garcia Lara [24] [27] [28]
52Ivica Letunic [34] [37]
53P. Lilja [27] [33]
54Rodrigo Lopez [25]
55M. Lukk [33]
56Peter Maccallum [15]
57Michele Magrane [25]
58R. Mani [33]
59Maria Jesus Martin [25]
60Satoru Miyano [36] [38]
61Bart De Moor [30]
62Yves Moreau [30]
63Gaurab Mukherjee [27] [28]
64Nicola J. Mulder [25]
65Claire O'Donovan [25]
66Ahmet Oezcimen [24] [27] [28]
67Chuang Kee Ong [37]
68Kimmo Palin [23]
69Helen E. Parkinson [21] [24] [25] [27] [28] [33]
70John Quackenbush [21]
71Tim Rayner [27] [28] [33]
72Juris Reinfelds [6]
73Martin Ringwald [21]
74Alan J. Robinson [15] [19]
75Philippe Rocca-Serra [21] [24] [27] [28]
76J. Rung [22]
77Susanna-Assunta Sansone [24] [27] [28]
78Ugis Sarkans [24] [26] [27] [28] [33]
79T. Schlitt [22]
80Christian Schwager [32]
81Anjan Sharma [27] [28] [33]
82Gavin Sherlock [21]
83Mohammadreza Shojatalab [24] [27] [28] [33]
84Paul T. Spellman [21]
85Jason E. Stewart [21]
86Christian J. Stoeckert Jr. [21]
87Peter Stoehr [25]
88Guenter Stoesser [25]
89Ronald Taylor [21]
90Brian D. M. Tom [31]
91Aurora Torrente [26] [29]
92Mary Ann Tuli [25]
93Esko Ukkonen [10] [11] [13] [14] [17] [18] [19] [23] [35]
94Kimmo Valtonen [13]
95Jaak Vilo [10] [11] [13] [14] [17] [18] [19] [22] [23] [24] [26]
96Martin Vingron [35]
97Xi Wang [37]
98Paul-Daniel Weeber [34] [37]
99E. William [33]
100Joachim Wittbrodt [34] [37]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)