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Alex Bateman

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2008
42EEJonathan D. Wren, Alex Bateman: Databases, data tombs and dust in the wind. Bioinformatics 24(19): 2127-2128 (2008)
41EEStephen John Sammut, Robert D. Finn, Alex Bateman: Pfam 10 years on: 10 000 families and still growing. Briefings in Bioinformatics 9(3): 210-219 (2008)
40EEAlex Bateman: Editorial. Nucleic Acids Research 36(Database-Issue): 1 (2008)
39EERobert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)
2007
38EEAlfonso Valencia, Alex Bateman: Editorial. Bioinformatics 23(2): 133 (2007)
37EEAlex Bateman, Robert D. Finn: SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics 23(7): 809-814 (2007)
36EEAlex Bateman: Editorial. Nucleic Acids Research 35(Database-Issue): 1-2 (2007)
35EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)
2006
34EEAlex Bateman: Bioinformatics - The new home for protein sequence motifs. Bioinformatics 22(1): 2 (2006)
33EEAlfonso Valencia, Alex Bateman: Software patents in Bioinformatics. Bioinformatics 22(12): 1415 (2006)
32EEAlex Bateman, Alfonso Valencia: Structural genomics meets computational biology. Bioinformatics 22(19): 2319 (2006)
31EEAlex Bateman: EDITORIAL. Nucleic Acids Research 34(Database-Issue): 1 (2006)
30EESam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright: miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research 34(Database-Issue): 140-144 (2006)
29EERobert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)
2005
28EEAlfonso Valencia, Alex Bateman: Increasing the Impact of Bioinformatics. Bioinformatics 21(1): 1-1 (2005)
27EEBenjamin Schuster-Böckler, Alex Bateman: Visualizing profile-profile alignment: pairwise HMM logos. Bioinformatics 21(12): 2912-2913 (2005)
26EEAlex Bateman, Alfonso Valencia: An update from the Bioinformatics Editors. Bioinformatics 21(24): 4319 (2005)
25EERobert D. Finn, Mhairi Marshall, Alex Bateman: iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21(3): 410-412 (2005)
24EEAlex Bateman, Matthew T. G. Holden, Corin Yeats: The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. Bioinformatics 21(8): 1301-1303 (2005)
23EEAlex Bateman: Editorial. Nucleic Acids Research 33(Database-Issue): 1 (2005)
22EESam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman: Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33(Database-Issue): 121-124 (2005)
21EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)
2004
20EEShane C. Dillon, Alex Bateman: The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. BMC Bioinformatics 5: 109 (2004)
19EELachlan James M. Coin, Alex Bateman, Richard Durbin: Enhanced protein domain discovery using taxonomy. BMC Bioinformatics 5: 56 (2004)
18EEAlex Bateman, Alfonso Valencia: New Leadership for Bioinformatics. Bioinformatics 20(12): 1821 (2004)
17 Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)
2003
16EEDavid J. Studholme, Neil D. Rawlings, Alan J. Barrett, Alex Bateman: A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised. BMC Bioinformatics 4: 17 (2003)
15EEAlex Bateman, Valerie A. Kickhoefer: The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins. BMC Bioinformatics 4: 49 (2003)
14 Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)
13 Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy: Rfam: an RNA family database. Nucleic Acids Research 31(1): 439-441 (2003)
2002
12EEAlex Bateman: The SGS3 protein involved in PTGS finds a family. BMC Bioinformatics 3: 21 (2002)
11 Kevin L. Howe, Alex Bateman, Richard Durbin: QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics 18(11): 1546-1547 (2002)
10 Sam Griffiths-Jones, Alex Bateman: The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics 18(9): 1243-1249 (2002)
9 Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings in Bioinformatics 3(3): 225-235 (2002)
8 Alex Bateman, Daniel H. Haft: HMM-based databases in InterPro. Briefings in Bioinformatics 3(3): 236-245 (2002)
7 Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)
2001
6 Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, J. Shi, Hiroki Shirai, Tom L. Blundell: HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinformatics 17(8): 748-749 (2001)
5 Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)
2000
4 Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)
3 Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000)
1999
2 Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)
1998
1 Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998)

Coauthor Index

1Rolf Apweiler [4] [5] [9] [14] [21] [35]
2Terri K. Attwood (Teresa K. Attwood) [4] [5] [9] [14] [21] [35]
3Amos Bairoch [4] [5] [9] [14] [21] [35]
4Paul I. W. de Bakker [6]
5Daniel Barrell [14]
6Alan J. Barrett [16]
7David Binns [9] [14] [21] [35]
8Ewan Birney [1] [2] [3] [4] [5] [7]
9Margaret Biswas [4] [5] [9] [14]
10Tom L. Blundell [6]
11Peer Bork [9] [14] [21] [35]
12Paul Bradley [9] [14] [21]
13Philipp Bucher [4] [5] [9] [14]
14Phillip Bucher [21]
15Virginie Buillard [35]
16David F. Burke [6]
17Goran Ceric [39]
18Lorenzo Cerutti [4] [5] [7] [21] [35]
19Penny C. Coggill [39]
20Lachlan James M. Coin [17] [19]
21Richard R. Copley [9] [14] [21] [35]
22Florence Corpet [4] [5]
23Emmanuel Courcelle [9] [14] [21] [35]
24Michael D. R. Croning [4] [5]
25Ujjwal Das [14] [21] [35]
26Louise Daugherty [35]
27Mark Dibley [35]
28Shane C. Dillon [20]
29Stijn van Dongen [30]
30Richard Durbin [1] [2] [3] [4] [5] [7] [9] [11] [14] [17] [19] [21] [29]
31Sean R. Eddy [1] [2] [3] [7] [13] [17] [22] [29] [39]
32Anton J. Enright [30]
33Laurence Ettwiller [7]
34Laurent Falquet [4] [5] [9] [14]
35Robert D. Finn [2] [17] [25] [29] [35] [37] [39] [41]
36Wolfgang Fleischmann [4] [5] [9] [14] [21] [35]
37Kristoffer Forslund [39]
38Julian Gough [21] [35]
39Jérôme Gouzy [4] [5] [9]
40Sam Griffiths-Jones [7] [9] [10] [13] [14] [17] [22] [29] [30]
41Russell J. Grocock [30]
42Daniel H. Haft [8] [9] [14] [21] [35]
43Nicola Harte [14] [21]
44Henning Hermjakob [4] [5] [9]
45Matthew T. G. Holden [24]
46Volker Hollich [17] [29]
47Hans-Rudolf Hotz [39]
48Kevin L. Howe [3] [7] [11]
49Nicolas Hulo [4] [5] [9] [14] [21] [35]
50Sarah Hunter [35]
51Inge Jonassen [4] [5]
52Daniel Kahn [4] [5] [9] [14] [21] [35]
53Alexander Kanapin [4] [5] [9] [14] [21] [35]
54Youla Karavidopoulou [4] [5]
55Anish Kejariwal [35]
56Ajay Khanna [13] [17] [22] [29]
57Valerie A. Kickhoefer [15]
58Maria Krestyaninova [9] [14] [21]
59Alberto Labarga [35]
60Petra S. Langendijk-Genevaux [35]
61Timo Lassmann [29]
62Ivica Letunic [9] [14] [21] [35]
63David Lonsdale [14] [21] [35]
64Rodrigo Lopez [4] [5] [9] [14] [21] [35]
65Martin Madera [21] [35]
66Mhairi Marshall [7] [13] [17] [22] [25] [29]
67Beate Marx [4] [5]
68John Maslen [21] [35]
69Craig McAnulla [35]
70Jennifer McDowall [21] [35]
71Ricardo Núñez Miguel [6]
72Jaina Mistry [29] [35] [39]
73Alex Mitchell [21] [35]
74Kenji Mizuguchi [6]
75Simon Moxon [17] [22] [29]
76Nicola J. Mulder [4] [5] [9] [14] [21] [35]
77Anastasia N. Nikolskaya [21] [35]
78Thomas M. Oinn (Tom Oinn) [4] [5]
79Sandra E. Orchard [14] [21] [35]
80Sue Orchard [9]
81Christine A. Orengo [35]
82Marco Pagni [4] [5] [9] [14] [21]
83Robert Petryszak [35]
84David Peyruc [9] [14]
85Chris P. Ponting [9] [14] [21]
86Emmanuel Quevillon [21]
87Neil D. Rawlings [16]
88Stephen John Sammut [39] [41]
89Benjamin Schuster-Böckler [27] [29]
90Jeremy D. Selengut [14] [21] [35]
91Florence Servant [4] [5] [9] [14]
92J. Shi [6]
93Hiroki Shirai [6]
94Christian J. A. Sigrist [4] [5] [9] [14] [21] [35]
95Ville Silventoinen [14] [21]
96Erik L. L. Sonnhammer [1] [2] [3] [7] [17] [29] [39]
97David J. Studholme [16] [17] [21]
98John Tate [39]
99Paul D. Thomas [35]
100Alfonso Valencia [18] [26] [28] [32] [33] [38]
101Franck Valentin [35]
102Robert Vaughan [14] [21]
103Derek Wilson [35]
104Jonathan D. Wren [42]
105Cathy H. Wu [21] [35]
106Corin Yeats [17] [24] [35]
107Evgeni M. Zdobnov [4] [5] [14]

Colors in the list of coauthors

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