Graziano Pesole

2008
40	EE	Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole: GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts. APBC 2008: 363-372
39	EE	Paolo D'Onorio De Meo, Danilo Carrabino, M. D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona: HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. CCGRID 2008: 747-752
38	EE	Tiziana Castrignanò, M. D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, A. M. D'Erchia, Flavio Licciulli, M. Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, A. Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole: ASPicDB: A database resource for alternative splicing analysis. Bioinformatics 24(10): 1300-1304 (2008)
37	EE	David S. Horner, Walter Pirovano, Graziano Pesole: Correlated substitution analysis and the prediction of amino acid structural contacts. Briefings in Bioinformatics 9(1): 46-56 (2008)
2007
36	EE	Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona: Selection of relevant genes in cancer diagnosis based on their prediction accuracy. Artificial Intelligence in Medicine 40(1): 29-44 (2007)
35	EE	Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona: Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data. Bioinformatics 23(16): 2063-2072 (2007)
34	EE	Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole: A high performance grid-web service framework for the identification of 'conserved sequence tags'. Future Generation Comp. Syst. 23(3): 371-381 (2007)
2006
33	EE	Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona: Classification error as a measure of gene relevance in cancer diagnosis. IJCNN 2006: 3553-3560
32	EE	Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole: GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Bioinformatics 22(4): 497-499 (2006)
31	EE	Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole: ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Research 34(Web-Server-Issue): 440-443 (2006)
30	EE	Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole: MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Research 34(Web-Server-Issue): 566-570 (2006)
2005
29		Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta: SVM and RLS Models for Cancer Classification. Computational Intelligence 2005: 250-255
28	EE	Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole: ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. BMC Bioinformatics 6: 244 (2005)
27	EE	Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole: UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Research 33(Database-Issue): 141-146 (2005)
26	EE	Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi: DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. Nucleic Acids Research 33(Database-Issue): 505-510 (2005)
2004
25	EE	Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole: DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. Bioinformatics 20(18): 3676-3679 (2004)
24	EE	Flavio Mignone, David S. Horner, Graziano Pesole: WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments. Bioinformatics 20(8): 1331-1333 (2004)
23		Giulio Pavesi, Giancarlo Mauri, Graziano Pesole: In silico representation and discovery of transcription factor binding sites. Briefings in Bioinformatics 5(3): 217-236 (2004)
22	EE	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole: An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences. J. Comput. Sci. Technol. 19(1): 2-12 (2004)
21		Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole: Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Research 32(Web-Server-Issue): 199-203 (2004)
20		Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole: CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Research 32(Web-Server-Issue): 624-627 (2004)
2003
19	EE	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole: Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. ICTAI 2003: 10-17
18	EE	Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi: A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. WABI 2003: 63-77
17		David S. Horner, Graziano Pesole: The estimation of relative site variability among aligned homologous protein sequences. Bioinformatics 19(5): 600-606 (2003)
16		Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole: PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Research 31(13): 3608-3612 (2003)
2002
15	EE	Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone: Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs. Computers & Chemistry 26(5): 479-490 (2002)
14		Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone: MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. Nucleic Acids Research 30(1): 172-173 (2002)
13		Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone: UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Research 30(1): 335-340 (2002)
2001
12		Giulio Pavesi, Giancarlo Mauri, Graziano Pesole: An algorithm for finding signals of unknown length in DNA sequences. ISMB (Supplement of Bioinformatics) 2001: 207-214
11		Giulio Pavesi, Giancarlo Mauri, Graziano Pesole: Methods for Pattern Discovery in Unaligned Biological Sequences. Briefings in Bioinformatics 2(4): 417 (2001)
2000
10		Graziano Pesole, Sabino Liuni, Mark D'Souza: PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. Bioinformatics 16(5): 439-450 (2000)
9		Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni: The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. Briefings in Bioinformatics 1(3): 236-249 (2000)
8		Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone: MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. Nucleic Acids Research 28(1): 163-165 (2000)
7		Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone: UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Nucleic Acids Research 28(1): 193-196 (2000)
1999
6		Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone: UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. Nucleic Acids Research 27(1): 188-191 (1999)
1998
5		Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone: UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. Nucleic Acids Research 26(1): 192-195 (1998)
1996
4		Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole: CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. Computer Applications in the Biosciences 12(1): 1-8 (1996)
3	EE	Graziano Pesole, Giorgio Grillo, Sabino Liuni: Databases of MRNA Untranslated Regions for Metazoa. Computers & Chemistry 20(1): 141-144 (1996)
1993
2		N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole: FASTPAT: a fast and efficient algorithm for string searching in DNA sequences. Computer Applications in the Biosciences 9(5): 541-545 (1993)
1		Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante: SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences. Computer Applications in the Biosciences 9(6): 701-707 (1993)

Coauthor Index

1	Tyler S. Alioto	[40]
2	Nicola Ancona	[29] [33] [35] [36] [39]
3	Anna Anselmo	[31] [38]
4	Marcella Attimonelli	[2] [4] [8] [14]
5	Andrea Ballabio	[26]
6	Sandro Banfi	[26]
7	Diego di Bernardo	[26]
8	Angelo Boccia	[26]
9	Paola Bonizzoni	[18] [28] [31] [38]
10	Alessandro Canali	[20]
11	Massimo Carella	[35]
12	Danilo Carrabino	[34] [38] [39]
13	Tiziana Castrignanò	[20] [31] [32] [34] [38]
14	Domenico Catalano	[8] [14] [35]
15	Stefano Confalonieri	[26]
16	Annarita D'Addabbo	[29] [33] [36] [39]
17	M. D'Antonio	[38] [39]
18	A. M. D'Erchia	[38]
19	Tiziana D'Orazio	[1]
20	Mark D'Souza	[10]
21	Arcangelo Distante	[1]
22	Jorge Duarte	[27]
23	Andreas Gisel	[25]
24	Carmela Gissi	[8] [13] [14]
25	Giorgio Grillo	[3] [4] [5] [6] [7] [8] [9] [13] [14] [16] [20] [25] [27] [32] [34]
26	Alessandro Guffanti	[26]
27	Roderic Guigó	[40]
28	David S. Horner	[17] [24] [37]
29	Michele Iacono	[27]
30	Matilde Ippedico	[6]
31	Paul Kersey	[27]
32	Alessandra Larizza	[6] [7] [9] [15]
33	Flavio Licciulli	[7] [8] [13] [14] [16] [25] [27] [34] [38]
34	Piepoli Licciulli	[35]
35	Sabino Liuni	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [13] [14] [16] [20] [25] [27] [29] [32] [33] [34] [35] [36] [39]
36	Lucilla Luzi	[26]
37	Rosalia Maglietta	[29] [33] [35] [36]
38	Wojciech Makalowski	[6] [7] [15]
39	M. Mangiulli	[38]
40	Giancarlo Mauri	[11] [12] [19] [21] [22] [23] [30]
41	A. D'Onorio De Meo	[38]
42	Paolo D'Onorio De Meo	[31] [32] [34] [39]
43	Paolo Mereghetti	[21] [30]
44	Flavio Mignone	[13] [20] [24] [26] [27] [32] [34] [38] [39]
45	Maria Panetta	[25]
46	Giovanni Paolella	[26]
47	Giulio Pavesi	[11] [12] [19] [21] [22] [23] [30] [38]
48	Francesco Perri	[33] [35] [36]
49	Mauro Petrillo	[26]
50	Ernesto Picardi	[38] [40]
51	Ada Piepoli	[33] [35] [36]
52	Walter Pirovano	[37]
53	N. Prunella	[1] [2]
54	Matteo Re	[34]
55	A. Riva	[38]
56	Raffaella Rizzi	[18] [28] [31] [38]
57	Cecilia Saccone	[5] [6] [7] [8] [13] [14] [15] [25] [27]
58	Nico Sanna	[34]
59	Monica Santamaria	[14]
60	Elisabetta Sbisà	[16]
61	Marco Stefani	[30]
62	Ettore Stella	[1]
63	Ivano Giuseppe Talamo	[31] [32]
64	Federico Zambelli	[30]