| 2005 | 
| 9 | EE | Julia V. Ponomarenko,
Galina Orlova,
Tatyana I. Merkulova,
Gennady V. Vasiliev,
Mikhail P. Ponomarenko:
Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site.
International Journal on Artificial Intelligence Tools 14(4): 599-620 (2005) | 
| 2003 | 
| 8 |   | Julia V. Ponomarenko,
Tatyana I. Merkulova,
Galina Orlova,
Oleg N. Fokin,
Elena Gorshkova,
Anatoly S. Frolov,
Vadim P. Valuev,
Mikhail P. Ponomarenko:
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.
Nucleic Acids Research 31(1): 118-121 (2003) | 
| 2002 | 
| 7 | EE | Julia V. Ponomarenko,
Tatyana I. Merkulova,
Galina Orlova,
Oleg N. Fokin,
Elena Gorshkova,
Mikhail P. Ponomarenko:
Mining DNA sequences to predict sites which mutations cause genetic diseases.
Knowl.-Based Syst. 15(4): 225-233 (2002) | 
| 6 |   | Julia V. Ponomarenko,
Galina Orlova,
Anatoly S. Frolov,
Mikhail S. Gelfand,
Mikhail P. Ponomarenko:
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data.
Nucleic Acids Research 30(1): 195-199 (2002) | 
| 2001 | 
| 5 |   | Julia V. Ponomarenko,
Tatyana I. Merkulova,
Galina Orlova,
Elena Gorshkova,
Oleg N. Fokin,
Mikhail P. Ponomarenko:
Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration.
BIBE 2001: 153-160 | 
| 4 |   | Julia V. Ponomarenko,
Tatyana I. Merkulova,
Galina Orlova,
Oleg N. Fokin,
Elena Gorshkova,
Mikhail P. Ponomarenko:
Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations.
German Conference on Bioinformatics 2001: 112-117 | 
| 3 |   | Julia V. Ponomarenko,
Dagmara P. Furman,
Anatoly S. Frolov,
Nikolay L. Podkolodny,
Galina Orlova,
Mikhail P. Ponomarenko,
Nikolay A. Kolchanov,
Akinori Sarai:
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.
Nucleic Acids Research 29(1): 284-287 (2001) | 
| 2 |   | Julia V. Ponomarenko,
Tatyana I. Merkulova,
Gennady V. Vasiliev,
Zoya B. Levashova,
Galina Orlova,
Sergey V. Lavryushev,
Oleg N. Fokin,
Mikhail P. Ponomarenko,
Anatoly S. Frolov,
Akinori Sarai:
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations.
Nucleic Acids Research 29(1): 312-316 (2001) | 
| 2000 | 
| 1 |   | Julia V. Ponomarenko,
Galina Orlova,
Mikhail P. Ponomarenko,
Sergey V. Lavryushev,
Anatoly S. Frolov,
Svetlana V. Zybova,
Nikolay A. Kolchanov:
SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.
Nucleic Acids Research 28(1): 205-208 (2000) |