Volume 2,
2001
- Björn M. Ursing, Frank H. J. van Enckevort, Jack A. M. Leunissen, Roland J. Siezen:
EXProt - a database for EXPerimentally verified Protein functions.
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- Tetsuo Nishikawa, Toshio Ota, Yuri Kawai, Shizuko Ishii, Kaoru Saito, Jun-ichi Yamamoto, Ai Wakamatsu, Masashi Ozawa, Yutaka Suzuki, Sumio Sugano, Takao Isogai:
Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries.
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- Masami Ikeda, Masafumi Arai, Demelo Madrazo Lao, Toshio Shimizu:
Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topology .
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Volume 2,
2002
Dagstuhl Seminar "Functional Genomics"
- Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz:
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface).
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- Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz, Andreas Stephanik:
BioDataServer: A SQL-based service for the online integration of life science data.
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- Falk Schreiber:
High quality visualization of biochemical pathways in BioPath.
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- Isabel Rojas, Luca Bernardi, Esther Ratsch, Renate Kania, Ulrike Wittig, Jasmin Saric:
A database system for the analysis of biochemical pathways.
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- Gabriel Moreno-Hagelsieb, Julio Collado-Vides:
Operon conservation from the point of view of Escherichia coli, and inference of functional inter-dependence of gene products from genome context.
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- Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin:
GeneNet database: description and modeling of gene networks.
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- Johannes Jaeger, Brian C. Goodwin:
Cellular oscillators in animal segmentation.
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- Konstantin Kozlov, Ekaterina Myasnikova, Andrei Pisarev, Maria Samsonova, John Reinitz:
A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ.
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- Patrizio Arrigo, Giovanni Ivaldi, Pasquale Paolo Cardo:
In silico determination of potential antisense targets for human beta-globin variants.
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- Mark Cooper, Scott C. Chapman, Dean W. Podlich, Graeme L. Hammer:
The GP problem: Quantifying gene-to-phenotype relationships.
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Special Issue:
GCB '01
- Edgar Wingender:
The German Conference on Bioinformatics 2001.
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- Dietmar Schomburg, Martin Vingron:
Bioinformatics research and education in Germany.
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- Jingchu Luo:
Bioinformatics service, education and research: the EMBnet and CBI.
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- Steffen Schulze-Kremer:
Ontologies for molecular biology and bioinformatics.
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- Oliver Rinner, Burkhard Morgenstern:
AGenDA: Gene prediction by comparative sequence analysis.
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- Änne Glass, Lothar Gierl:
A system architecture for genomic data analysis.
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- Ania Barbasiewicz, Lin Liu, B. Franz Lang, Gertraud Burger:
Building a genome database using an object-oriented approach.
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- Jacob Köhler, Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
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- Yuri L. Orlov, V. P. Filippov, V. N. Potapov, Nikolay A. Kolchanov:
Construction of stochastic context trees for genetical texts.
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- Thomas Werner:
Finding and decrypting of promoters contributes to the elucidation of gene function.
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- Eugenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnevsky, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov:
Computer system "Gene Discovery" for promoter structure analysis.
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- Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, Ueng-Cheng Yang, Yu-Chang Chang:
Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae.
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- Rolf Backofen, N. S. Narayanaswamy, Firas Swidan:
Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation.
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- Zhi-Ping Feng:
An overview on predicting the subcellular location of a protein.
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- Karin Wieligmann, Luis Felipe Pineda De Castro, Martin Zacharias:
Molecular dynamics simulations on the free and complexed N-terminal SH2 domain of SHP-2.
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- Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
ProML - the Protein Markup Language for specification of protein sequences, structures and families.
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- Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
Improving fold recognition of protein threading by experimental distance constraints.
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- Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer:
A hypergraph-based method for unification of existing protein structure- and sequence-families.
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- Kerstin Koch, Frank Zöllner, Steffen Neumann, Franz Kummert, Gerhard Sagerer:
Comparing bound and unbound protein structures using energy calculation and rotamer statistics.
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- Rainer Spang, Carrie Blanchette, Harry Zuzan, Jeffrey R. Marks, Joseph Nevins, Mike West:
Prediction and uncertainty in the analysis of gene expression profiles.
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- Martin Dugas, Claudia Schoch, Susanne Schnittger, Alexander Kohlmann, Wolfgang Kern, Torsten Haferlach, Karl Überla:
Integration of clinical and genetic information - from patient data to gene expression analysis.
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- Sabine Dormann, Andreas Deutsch:
Modeling of self-organized avascular tumor growth with cellular automata.
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- Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis.
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- Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber, Franz-Josef Brandenburg:
The system architecture of the BioPath system.
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- Martin Frank, Andreas Bohne, Thomas Wetter, Claus-Wilhelm von der Lieth:
Knowledge-based approach for the rapid generation of a representative ensemble of N-glycan conformations.
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Further regular articles
- Addie Nina Olsen, John Mundy, Karen Skriver:
Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs.
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- Maura Cárdenas-García, Jaime Lagunez-Otero, Nikolai A. Korneev:
The application of abstract topology to RAS-related signal transduction pathways.
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- Allen Chong, Guanglan Zhang, Vladimir B. Bajic:
Information and sequence extraction around the 5'-end and translation initiation site of human genes.
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- Jochen Hurlebaus, Arne Buchholz, Wolfgang Alt, Wolfgang Wiechert, Ralf Takors:
MMT - A pathway modeling tool for data from rapid sampling experiments.
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- Demelo Madrazo Lao, Toshikatsu Okuno, Toshio Shimizu:
Evaluating transmembrane topology prediction methods for the effect of signal peptide in topology prediction.
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- German Nudelman, Tamar Tennenbaum, Ramit Mehr, Ron Unger:
PESI - An intelligent system for Prediction of Enzyme - Substrate Interactions based on experimental constraints.
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- Ashwin Sivakumar:
2D Gels and bioinformatics - An eye at the future.
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- Amanda Clare, Ross D. King:
How well do we understand the clusters found in microarray data?
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- Susan B. Davidson, Christian J. Stoeckert Jr.:
In memory of Vadim Aleksandrovich Ratner.
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- Anna Zorzet, Mats G. Gustafsson, Ulf Hammerling:
Prediction of food protein allergenicity: a bioinformatic learning systems approach.
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Copyright © Sun May 17 00:04:25 2009
by Michael Ley (ley@uni-trier.de)
