5. DILS 2008: Evry, France

Keynote Presentations

• Olivier Bodenreider:
  Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues. 1-4
  Electronic Edition (link) BibTeX
• Peter D. Karp, Thomas J. Lee, Valerie Wagner:
  BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats. 5-7
  Electronic Edition (link) BibTeX
• Norman W. Paton:
  Data Integration in the Life Sciences: Fun, Findings and Frustrations. 8-10
  Electronic Edition (link) BibTeX

Semantic Web for the Life Sciences

• Michael Hartung, Toralf Kirsten, Erhard Rahm:
  Analyzing the Evolution of Life Science Ontologies and Mappings. 11-27
  Electronic Edition (link) BibTeX
• Xiaoshu Wang, Jonas S. Almeida, Arlindo L. Oliveira:
  Ontology Design Principles and Normalization Techniques in the Web. 28-43
  Electronic Edition (link) BibTeX
• Woei-Jyh Lee, Louiqa Raschid, Hassan Sayyadi, Padmini Srinivasan:
  Exploiting Ontology Structure and Patterns of Annotation to Mine Significant Associations between Pairs of Controlled Vocabulary Terms. 44-60
  Electronic Edition (link) BibTeX

Designing and Evaluating Architectures to Integrate Biological Data

• Fleur Mougin, Anita Burgun, Olivier Bodenreider, Julie Chabalier, Olivier Loréal, Pierre Le Beux:
  Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. 61-76
  Electronic Edition (link) BibTeX
• Joanna Jakubowska, Ela Hunt, John McClure, Matthew Chalmers, Martin McBride, Anna F. Dominiczak:
  VisGenome and Ensembl: Usability of Integrated Genome Maps. 77-91
  Electronic Edition (link) BibTeX
• Lucas Lochovsky, Thodoros Topaloglou:
  An Entity Resolution Framework for Deduplicating Proteins. 92-107
  Electronic Edition (link) BibTeX

New Architectures and Experience on Using Systems

• E. Patrick Shironoshita, Ray M. Bradley, Yves R. Jean-Mary, Thomas J. Taylor, Michael T. Ryan, Mansur R. Kabuka:
  Semantic Representation and Querying of caBIG Data Services. 108-115
  Electronic Edition (link) BibTeX
• Georgios Joannis Pappas Jr., Robson P. Miranda, Natália F. Martins, Roberto C. Togawa, Marcos M. C. Costa:
  SisGen: A CORBA-Based Data Management Program for DNA Sequencing Projects. 116-123
  Electronic Edition (link) BibTeX
• Frederic Bastian, Gilles Parmentier, Julien Roux, Sébastien Moretti, Vincent Laudet, Marc Robinson-Rechavi:
  Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species. 124-131
  Electronic Edition (link) BibTeX
• Florian Reisinger, Manuel Corpas, John Hancock, Henning Hermjakob, Ewan Birney, Pascal Kahlem:
  ENFIN - An Integrative Structure for Systems Biology. 132-143
  Electronic Edition (link) BibTeX

Systems Using Technologies from the Semantic Web for the Life Sciences

• Clement Jonquet, Mark A. Musen, Nigam Shah:
  A System for Ontology-Based Annotation of Biomedical Data. 144-152
  Electronic Edition (link) BibTeX
• François Belleau, Nicole Tourigny, Benjamin Good, Jean Morissette:
  Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse. 153-160
  Electronic Edition (link) BibTeX
• Amel Bouzeghoub, Abdeltif Elbyed, Fariza Tahi:
  OMIE: Ontology Mapping within an Interactive and Extensible Environment. 161-168
  Electronic Edition (link) BibTeX
• Mykola Konyk, Alexander De Leon Battista, Michel Dumontier:
  Chemical Knowledge for the Semantic Web. 169-176
  Electronic Edition (link) BibTeX

Mining Integrated Biological Data

• José A. Reyes, David Gilbert:
  Combining One-Class Classification Models Based on Diverse Biological Data for Prediction of Protein-Protein Interactions. 177-191
  Electronic Edition (link) BibTeX
• Alok Mishra, Duncan Gillies:
  Semi Supervised Spectral Clustering for Regulatory Module Discovery. 192-203
  Electronic Edition (link) BibTeX

New Features of Major Resources for Biomolecular Data

• Amos Bairoch:
  UniProtKB/Swiss-Prot: New and Future Developments. 204-206
  Electronic Edition (link) BibTeX
• Henning Hermjakob:
  EBI Proteomics Services. 207
  Electronic Edition (link) BibTeX

DILS 2008 Tutorial

• Olivier Dameron, Julie Chabalier:
  Bio-ontologies Tutorial. 208
  Electronic Edition (link) BibTeX