Marco Pagni

2008
20	EE	Marco Pagni, Jörg Hau, Heinz Stockinger: A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML. CCGRID 2008: 728-734
2007
19	EE	Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C. Victor Jongeneel, Jörg Hau, Olivier Martin, Dmitri Kuznetsov, Laurent Falquet: MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic Acids Research 35(Web-Server-Issue): 433-437 (2007)
2006
18	EE	Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, Laurent Falquet: Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems. e-Science 2006: 58
17	EE	Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist: The PROSITE database. Nucleic Acids Research 34(Database-Issue): 227-230 (2006)
2005
16	EE	Peter Sperisen, Marco Pagni: JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture. BMC Bioinformatics 6: 216 (2005)
15	EE	Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)
2004
14		Peter Sperisen, Christian Iseli, Marco Pagni, Brian J. Stevenson, Philipp Bucher, C. Victor Jongeneel: trome, trEST and trGEN: databases of predicted protein sequences. Nucleic Acids Research 32(Database-Issue): 509-511 (2004)
13		Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C. Victor Jongeneel, Laurent Falquet: MyHits: a new interactive resource for protein annotation and domain identification. Nucleic Acids Research 32(Web-Server-Issue): 332-335 (2004)
2003
12	EE	Alexandre Gattiker, Karine Michoud, Catherine Rivoire, Andrea H. Auchincloss, Elisabeth Coudert, Tania Lima, Paul Kersey, Marco Pagni, Christian J. A. Sigrist, Corinne Lachaize, Anne-Lise Veuthey, Elisabeth Gasteiger, Amos Bairoch: Automated annotation of microbial proteomes in SWISS-PROT. Computational Biology and Chemistry 27(1): 49-58 (2003)
11		Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)
10		Laurent Falquet, Lorenza Bordoli, Vassilios Ioannidis, Marco Pagni, C. Victor Jongeneel: Swiss EMBnet node web server. Nucleic Acids Research 31(13): 3782-3783 (2003)
2002
9		Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings in Bioinformatics 3(3): 225-235 (2002)
8		Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher: PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. Briefings in Bioinformatics 3(3): 265-274 (2002)
7		Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch: The PROSITE database, its status in 2002. Nucleic Acids Research 30(1): 235-238 (2002)
2001
6		Thomas Junier, Marco Pagni, Philipp Bucher: mmsearch: a motif arrangement language and search program. Bioinformatics 17(12): 1234-1235 (2001)
5		Marco Pagni, C. Victor Jongeneel: Making Sense of Score Statistics for Sequence Alignments. Briefings in Bioinformatics 2(1): 51-67 (2001)
4		Marco Pagni, Christian Iseli, Thomas Junier, Laurent Falquet, C. Victor Jongeneel, Philipp Bucher: trEST, trGEN and Hits: access to databases of predicted protein sequences. Nucleic Acids Research 29(1): 148-151 (2001)
3		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)
2000
2		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)
1		Thomas Junier, Marco Pagni: Dotlet: diagonal plots in a Web browser. Bioinformatics 16(2): 178-179 (2000)

Coauthor Index

1	Rolf Apweiler	[2] [3] [9] [11] [15]
2	Terri K. Attwood (Teresa K. Attwood)	[2] [3] [9] [11] [15]
3	Andrea H. Auchincloss	[12]
4	Amos Bairoch	[2] [3] [7] [8] [9] [11] [12] [15] [17]
5	Daniel Barrell	[11]
6	Alex Bateman	[2] [3] [9] [11] [15]
7	David Binns	[9] [11] [15]
8	Ewan Birney	[2] [3]
9	Margaret Biswas	[2] [3] [9] [11]
10	Lorenza Bordoli	[10]
11	Peer Bork	[9] [11] [15]
12	Paul Bradley	[9] [11] [15]
13	Philipp Bucher	[2] [3] [4] [6] [7] [8] [9] [11] [14]
14	Phillip Bucher	[15]
15	Virginie Bulliard	[17]
16	Edouard De Castro	[17]
17	Lorenzo Cerutti	[2] [3] [8] [13] [15] [17] [18] [19]
18	Richard R. Copley	[9] [11] [15]
19	Florence Corpet	[2] [3]
20	Elisabeth Coudert	[12]
21	Emmanuel Courcelle	[9] [11] [15]
22	Michael D. R. Croning	[2] [3]
23	Ujjwal Das	[11] [15]
24	Richard Durbin	[2] [3] [9] [11] [15]
25	Laurent Falquet	[2] [3] [4] [7] [8] [9] [10] [11] [13] [18] [19]
26	Wolfgang Fleischmann	[2] [3] [9] [11] [15]
27	Elisabeth Gasteiger	[12]
28	Alexandre Gattiker	[8] [12]
29	Julian Gough	[15]
30	Jérôme Gouzy	[2] [3] [9]
31	Sam Griffiths-Jones	[9] [11]
32	Daniel H. Haft	[9] [11] [15]
33	Nicola Harte	[11] [15]
34	Jörg Hau	[19] [20]
35	Henning Hermjakob	[2] [3] [9]
36	Kay Hofmann	[7]
37	Nicolas Hulo	[2] [3] [7] [8] [9] [11] [15] [17]
38	Vassilios Ioannidis	[10] [13] [19]
39	Christian Iseli	[4] [14]
40	Inge Jonassen	[2] [3]
41	C. Victor Jongeneel	[4] [5] [10] [13] [14] [19]
42	Thomas Junier	[1] [4] [6]
43	Daniel Kahn	[2] [3] [9] [11] [15]
44	Alexander Kanapin	[2] [3] [9] [11] [15]
45	Youla Karavidopoulou	[2] [3]
46	Paul Kersey	[12]
47	Maria Krestyaninova	[9] [11] [15]
48	Dmitri Kuznetsov	[19]
49	Corinne Lachaize	[12]
50	Petra S. Langendijk-Genevaux	[17]
51	Ivica Letunic	[9] [11] [15]
52	Tania Lima	[12]
53	David Lonsdale	[11] [15]
54	Rodrigo Lopez	[2] [3] [9] [11] [15]
55	Martin Madera	[15]
56	Olivier Martin	[19]
57	Beate Marx	[2] [3]
58	John Maslen	[15]
59	Jennifer McDowall	[15]
60	Karine Michoud	[12]
61	Alex Mitchell	[15]
62	Nicola J. Mulder	[2] [3] [9] [11] [15]
63	Anastasia N. Nikolskaya	[15]
64	Thomas M. Oinn (Tom Oinn)	[2] [3]
65	Sandra E. Orchard	[11] [15]
66	Sue Orchard	[9]
67	David Peyruc	[9] [11]
68	Chris P. Ponting	[9] [11] [15]
69	Emmanuel Quevillon	[15]
70	Catherine Rivoire	[12]
71	Jeremy D. Selengut	[11] [15]
72	Florence Servant	[2] [3] [9] [11]
73	Christian J. A. Sigrist	[2] [3] [7] [8] [9] [11] [12] [15] [17]
74	Ville Silventoinen	[11] [15]
75	Peter Sperisen	[14] [16]
76	Brian J. Stevenson	[14]
77	Heinz Stockinger	[18] [20]
78	David J. Studholme	[15]
79	Robert Vaughan	[11] [15]
80	Anne-Lise Veuthey	[12]
81	Cathy H. Wu	[15]
82	Monique Zahn-Zabal	[13] [19]
83	Evgeni M. Zdobnov	[2] [3] [11]