Sean R. Eddy

2008
25	EE	Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)
2006
24	EE	Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)
2005
23	EE	Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman: Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33(Database-Issue): 121-124 (2005)
2004
22	EE	Robin D. Dowell, Sean R. Eddy: Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinformatics 5: 71 (2004)
21		Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)
2003
20	EE	Robert J. Klein, Sean R. Eddy: RSEARCH: Finding homologs of single structured RNA sequences. BMC Bioinformatics 4: 44 (2003)
19		Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy: Rfam: an RNA family database. Nucleic Acids Research 31(1): 439-441 (2003)
2002
18	EE	Christian M. Zmasek, Sean R. Eddy: RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. BMC Bioinformatics 3: 14 (2002)
17	EE	Sean R. Eddy: A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics 3: 18 (2002)
16		Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)
2001
15	EE	Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein: The Distributed Annotation System. BMC Bioinformatics 2: 7 (2001)
14	EE	Elena Rivas, Sean R. Eddy: Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics 2: 8 (2001)
13		Christian M. Zmasek, Sean R. Eddy: ATV: display and manipulation of annotated phylogenetic. Bioinformatics 17(4): 383-384 (2001)
12		Christian M. Zmasek, Sean R. Eddy: A simple algorithm to infer gene duplication and speciation events on a gene tree. Bioinformatics 17(9): 821-828 (2001)
2000
11		Elena Rivas, Sean R. Eddy: The language of RNA: a formal grammar that includes pseudoknots. Bioinformatics 16(4): 334-340 (2000)
10		Elena Rivas, Sean R. Eddy: Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics 16(7): 583-605 (2000)
9		Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000)
1999
8		Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)
1998
7		Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge University Press 1998
6		Sean R. Eddy: [Invited Lecture] Genome sequence analysis and profile hidden Markov models. German Conference on Bioinformatics 1998
5		Sean R. Eddy: Profile hidden Markov models. Bioinformatics 14(9): 755-763 (1998)
4		Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998)
1995
3		Henry Ellingworth, Sean R. Eddy: RNA structure alignment on a massively parallel computer. HPCN Europe 1995: 502-507
2		Sean R. Eddy: Multiple Alignment Using Hidden Markov Models. ISMB 1995: 114-120
1		Sean R. Eddy, Graeme J. Mitchison, Richard Durbin: Maximum Discrimination Hidden Markov Models of Sequence Consensus. Journal of Computational Biology 2(1): 9-23 (1995)

Coauthor Index

1	Alex Bateman	[4] [8] [9] [16] [19] [21] [23] [24] [25]
2	Ewan Birney	[4] [8] [9] [16]
3	Goran Ceric	[25]
4	Lorenzo Cerutti	[16]
5	Penny C. Coggill	[25]
6	Lachlan James M. Coin	[21]
7	Allen Day	[15]
8	Robin D. Dowell	[15] [22]
9	Richard Durbin	[1] [4] [7] [8] [9] [16] [21] [24]
10	Henry Ellingworth	[3]
11	Laurence Ettwiller	[16]
12	Robert D. Finn	[8] [21] [24] [25]
13	Kristoffer Forslund	[25]
14	Sam Griffiths-Jones	[16] [19] [21] [23] [24]
15	Volker Hollich	[21] [24]
16	Hans-Rudolf Hotz	[25]
17	Kevin L. Howe	[9] [16]
18	Rodney M. Jokerst	[15]
19	Ajay Khanna	[19] [21] [23] [24]
20	Robert J. Klein	[20]
21	Anders Krogh	[7]
22	Timo Lassmann	[24]
23	Mhairi Marshall	[16] [19] [21] [23] [24]
24	Jaina Mistry	[24] [25]
25	Graeme J. Mitchison	[1] [7]
26	Simon Moxon	[21] [23] [24]
27	Elena Rivas	[10] [11] [14]
28	Stephen John Sammut	[25]
29	Benjamin Schuster-Böckler	[24]
30	Erik L. L. Sonnhammer	[4] [8] [9] [16] [21] [24] [25]
31	Lincoln Stein	[15]
32	David J. Studholme	[21]
33	John Tate	[25]
34	Corin Yeats	[21]
35	Christian M. Zmasek	[12] [13] [18]

Colors in the list of coauthors