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Erik L. L. Sonnhammer

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2008
37EEAlistair M. Chalk, Erik L. L. Sonnhammer: siRNA specificity searching incorporating mismatch tolerance data. Bioinformatics 24(10): 1316-1317 (2008)
36EEMartin Klammer, Sanjit Roopra, Erik L. L. Sonnhammer: jSquid: a Java applet for graphical on-line network exploration. Bioinformatics 24(12): 1467-1468 (2008)
35EEKristoffer Forslund, Erik L. L. Sonnhammer: Predicting protein function from domain content. Bioinformatics 24(15): 1681-1687 (2008)
34EEKristoffer Forslund, Erik L. L. Sonnhammer: Predicting protein function from domain content. Bioinformatics 24(19): 2275 (2008)
33EEAnn-Charlotte Berglund, Erik Sjölund, Gabriel Östlund, Erik L. L. Sonnhammer: InParanoid 6: eukaryotic ortholog clusters with inparalogs. Nucleic Acids Research 36(Database-Issue): 263-266 (2008)
32EERobert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)
2007
31EEVolker Hollich, Erik L. L. Sonnhammer: PfamAlyzer: domain-centric homology search. Bioinformatics 23(24): 3382-3383 (2007)
30EELukas Käll, Anders Krogh, Erik L. L. Sonnhammer: Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research 35(Web-Server-Issue): 429-432 (2007)
2006
29EEAndrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer: Automatic clustering of orthologs and inparalogs shared by multiple proteomes. ISMB (Supplement of Bioinformatics) 2006: 9-15
28EERobert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)
27EETimo Lassmann, Erik L. L. Sonnhammer: Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. Nucleic Acids Research 34(Web-Server-Issue): 596-599 (2006)
2005
26EELukas Käll, Anders Krogh, Erik L. L. Sonnhammer: An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257
25EEErik L. L. Sonnhammer, Volker Hollich: Scoredist: A simple and robust protein sequence distance estimator. BMC Bioinformatics 6: 108 (2005)
24EETimo Lassmann, Erik L. L. Sonnhammer: Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 6: 298 (2005)
23EEMarkus Wistrand, Erik L. L. Sonnhammer: Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. BMC Bioinformatics 6: 99 (2005)
22EEAlistair M. Chalk, Richard E. Warfinge, Patrick Georgii-Hemming, Erik L. L. Sonnhammer: siRNAdb: a database of siRNA sequences. Nucleic Acids Research 33(Database-Issue): 131-134 (2005)
21EESaraswathi Abhiman, Erik L. L. Sonnhammer: FunShift: a database of function shift analysis on protein subfamilies. Nucleic Acids Research 33(Database-Issue): 197-200 (2005)
20EEKevin P. O'Brien, Maido Remm, Erik L. L. Sonnhammer: Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Research 33(Database-Issue): 476-480 (2005)
2004
19EEGustavo Camps-Valls, Alistair M. Chalk, Antonio J. Serrano-López, José David Martín-Guerrero, Erik L. L. Sonnhammer: Profiled support vector machines for antisense oligonucleotide efficacy prediction. BMC Bioinformatics 5: 135 (2004)
18EEAlistair M. Chalk, Martin Wennerberg, Erik L. L. Sonnhammer: Sfixem - graphical sequence feature display in Java. Bioinformatics 20(15): 2488-2490 (2004)
17EESven Ekdahl, Erik L. L. Sonnhammer: ChromoWheel: a new spin on eukaryotic chromosome visualization. Bioinformatics 20(4): (2004)
16EEMarkus Wistrand, Erik L. L. Sonnhammer: Transition Priors for Protein Hidden Markov Models: An Empirical Study towards Maximum Discrimination. Journal of Computational Biology 11(1): 181-193 (2004)
15 Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)
2002
14 Christian E. V. Storm, Erik L. L. Sonnhammer: Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics 18(1): 92-99 (2002)
13 Alistair M. Chalk, Erik L. L. Sonnhammer: Computational antisense oligo prediction with a neural network model. Bioinformatics 18(12): 1567-1575 (2002)
12 Volker Hollich, Christian E. V. Storm, Erik L. L. Sonnhammer: OrthoGUI: graphical presentation of Orthostrapper results. Bioinformatics 18(9): 1272-1273 (2002)
11 Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)
2001
10 Christian E. V. Storm, Erik L. L. Sonnhammer: NIFAS: visual analysis of domain evolution in proteins. Bioinformatics 17(4): 343-348 (2001)
9 Raf M. Podowski, Erik L. L. Sonnhammer: MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs. Bioinformatics 17(7): 656-657 (2001)
2000
8 Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000)
1999
7 Arne Elofsson, Erik L. L. Sonnhammer: A comparison of sequence and structure protein domain families as a basis for structural genomics. Bioinformatics 15(6): 480-500 (1999)
6 Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)
1998
5 Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh: A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182
4 Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998)
1994
3 Erik L. L. Sonnhammer, Richard Durbin: An Expert System for Processing Sequence Homology Data. ISMB 1994: 363-368
2 Erik L. L. Sonnhammer, Richard Durbin: A workbench for large-scale sequence homology analysis. Computer Applications in the Biosciences 10(3): 301-307 (1994)
1992
1 H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, H. V. Westerhoff: METASIM: object-oriented modelling of cell regulation. Computer Applications in the Biosciences 8(5): 443-449 (1992)

Coauthor Index

1Saraswathi Abhiman [21]
2Andrey Alexeyenko [29]
3Alex Bateman [4] [6] [8] [11] [15] [28] [32]
4Ewan Birney [4] [6] [8] [11]
5G. J. Blommestijn [1]
6Gustavo Camps-Valls [19]
7Goran Ceric [32]
8Lorenzo Cerutti [11]
9Alistair M. Chalk [13] [18] [19] [22] [37]
10Penny C. Coggill [32]
11Lachlan James M. Coin [15]
12Richard Durbin [2] [3] [4] [6] [8] [11] [15] [28]
13Sean R. Eddy [4] [6] [8] [11] [15] [28] [32]
14Sven Ekdahl [17]
15Arne Elofsson [7]
16Laurence Ettwiller [11]
17Robert D. Finn [6] [15] [28] [32]
18Kristoffer Forslund [32] [34] [35]
19Patrick Georgii-Hemming [22]
20Sam Griffiths-Jones [11] [15] [28]
21Gunnar von Heijne [5]
22Volker Hollich [12] [15] [25] [28] [31]
23Hans-Rudolf Hotz [32]
24Kevin L. Howe [8] [11]
25Lukas Käll [26] [30]
26Ajay Khanna [15] [28]
27Martin Klammer [36]
28Anders Krogh [5] [26] [30]
29Timo Lassmann [24] [27] [28]
30Gang Liu [29]
31Mhairi Marshall [11] [15] [28]
32José David Martín-Guerrero [19]
33Jaina Mistry [28] [32]
34Simon Moxon [15] [28]
35Kevin P. O'Brien [20]
36Gabriel Östlund [33]
37Raf M. Podowski [9]
38N. J. Raat [1]
39Maido Remm [20]
40Sanjit Roopra [36]
41Stephen John Sammut [32]
42Benjamin Schuster-Böckler [28]
43Antonio J. Serrano-López [19]
44Erik Sjölund [33]
45Ann-Charlotte Berglund Sonnhammer (Ann-Charlotte Berglund) [33]
46H. J. Stoffers [1]
47Christian E. V. Storm [10] [12] [14]
48David J. Studholme [15]
49Ivica Tamas [29]
50John Tate [32]
51Richard E. Warfinge [22]
52Martin Wennerberg [18]
53H. V. Westerhoff [1]
54Markus Wistrand [16] [23]
55Corin Yeats [15]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)