Erik L. L. Sonnhammer

2008
37	EE	Alistair M. Chalk, Erik L. L. Sonnhammer: siRNA specificity searching incorporating mismatch tolerance data. Bioinformatics 24(10): 1316-1317 (2008)
36	EE	Martin Klammer, Sanjit Roopra, Erik L. L. Sonnhammer: jSquid: a Java applet for graphical on-line network exploration. Bioinformatics 24(12): 1467-1468 (2008)
35	EE	Kristoffer Forslund, Erik L. L. Sonnhammer: Predicting protein function from domain content. Bioinformatics 24(15): 1681-1687 (2008)
34	EE	Kristoffer Forslund, Erik L. L. Sonnhammer: Predicting protein function from domain content. Bioinformatics 24(19): 2275 (2008)
33	EE	Ann-Charlotte Berglund, Erik Sjölund, Gabriel Östlund, Erik L. L. Sonnhammer: InParanoid 6: eukaryotic ortholog clusters with inparalogs. Nucleic Acids Research 36(Database-Issue): 263-266 (2008)
32	EE	Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)
2007
31	EE	Volker Hollich, Erik L. L. Sonnhammer: PfamAlyzer: domain-centric homology search. Bioinformatics 23(24): 3382-3383 (2007)
30	EE	Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research 35(Web-Server-Issue): 429-432 (2007)
2006
29	EE	Andrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer: Automatic clustering of orthologs and inparalogs shared by multiple proteomes. ISMB (Supplement of Bioinformatics) 2006: 9-15
28	EE	Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)
27	EE	Timo Lassmann, Erik L. L. Sonnhammer: Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. Nucleic Acids Research 34(Web-Server-Issue): 596-599 (2006)
2005
26	EE	Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257
25	EE	Erik L. L. Sonnhammer, Volker Hollich: Scoredist: A simple and robust protein sequence distance estimator. BMC Bioinformatics 6: 108 (2005)
24	EE	Timo Lassmann, Erik L. L. Sonnhammer: Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 6: 298 (2005)
23	EE	Markus Wistrand, Erik L. L. Sonnhammer: Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. BMC Bioinformatics 6: 99 (2005)
22	EE	Alistair M. Chalk, Richard E. Warfinge, Patrick Georgii-Hemming, Erik L. L. Sonnhammer: siRNAdb: a database of siRNA sequences. Nucleic Acids Research 33(Database-Issue): 131-134 (2005)
21	EE	Saraswathi Abhiman, Erik L. L. Sonnhammer: FunShift: a database of function shift analysis on protein subfamilies. Nucleic Acids Research 33(Database-Issue): 197-200 (2005)
20	EE	Kevin P. O'Brien, Maido Remm, Erik L. L. Sonnhammer: Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Research 33(Database-Issue): 476-480 (2005)
2004
19	EE	Gustavo Camps-Valls, Alistair M. Chalk, Antonio J. Serrano-López, José David Martín-Guerrero, Erik L. L. Sonnhammer: Profiled support vector machines for antisense oligonucleotide efficacy prediction. BMC Bioinformatics 5: 135 (2004)
18	EE	Alistair M. Chalk, Martin Wennerberg, Erik L. L. Sonnhammer: Sfixem - graphical sequence feature display in Java. Bioinformatics 20(15): 2488-2490 (2004)
17	EE	Sven Ekdahl, Erik L. L. Sonnhammer: ChromoWheel: a new spin on eukaryotic chromosome visualization. Bioinformatics 20(4): (2004)
16	EE	Markus Wistrand, Erik L. L. Sonnhammer: Transition Priors for Protein Hidden Markov Models: An Empirical Study towards Maximum Discrimination. Journal of Computational Biology 11(1): 181-193 (2004)
15		Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)
2002
14		Christian E. V. Storm, Erik L. L. Sonnhammer: Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics 18(1): 92-99 (2002)
13		Alistair M. Chalk, Erik L. L. Sonnhammer: Computational antisense oligo prediction with a neural network model. Bioinformatics 18(12): 1567-1575 (2002)
12		Volker Hollich, Christian E. V. Storm, Erik L. L. Sonnhammer: OrthoGUI: graphical presentation of Orthostrapper results. Bioinformatics 18(9): 1272-1273 (2002)
11		Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)
2001
10		Christian E. V. Storm, Erik L. L. Sonnhammer: NIFAS: visual analysis of domain evolution in proteins. Bioinformatics 17(4): 343-348 (2001)
9		Raf M. Podowski, Erik L. L. Sonnhammer: MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs. Bioinformatics 17(7): 656-657 (2001)
2000
8		Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000)
1999
7		Arne Elofsson, Erik L. L. Sonnhammer: A comparison of sequence and structure protein domain families as a basis for structural genomics. Bioinformatics 15(6): 480-500 (1999)
6		Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)
1998
5		Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh: A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182
4		Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998)
1994
3		Erik L. L. Sonnhammer, Richard Durbin: An Expert System for Processing Sequence Homology Data. ISMB 1994: 363-368
2		Erik L. L. Sonnhammer, Richard Durbin: A workbench for large-scale sequence homology analysis. Computer Applications in the Biosciences 10(3): 301-307 (1994)
1992
1		H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, H. V. Westerhoff: METASIM: object-oriented modelling of cell regulation. Computer Applications in the Biosciences 8(5): 443-449 (1992)

Coauthor Index

1	Saraswathi Abhiman	[21]
2	Andrey Alexeyenko	[29]
3	Alex Bateman	[4] [6] [8] [11] [15] [28] [32]
4	Ewan Birney	[4] [6] [8] [11]
5	G. J. Blommestijn	[1]
6	Gustavo Camps-Valls	[19]
7	Goran Ceric	[32]
8	Lorenzo Cerutti	[11]
9	Alistair M. Chalk	[13] [18] [19] [22] [37]
10	Penny C. Coggill	[32]
11	Lachlan James M. Coin	[15]
12	Richard Durbin	[2] [3] [4] [6] [8] [11] [15] [28]
13	Sean R. Eddy	[4] [6] [8] [11] [15] [28] [32]
14	Sven Ekdahl	[17]
15	Arne Elofsson	[7]
16	Laurence Ettwiller	[11]
17	Robert D. Finn	[6] [15] [28] [32]
18	Kristoffer Forslund	[32] [34] [35]
19	Patrick Georgii-Hemming	[22]
20	Sam Griffiths-Jones	[11] [15] [28]
21	Gunnar von Heijne	[5]
22	Volker Hollich	[12] [15] [25] [28] [31]
23	Hans-Rudolf Hotz	[32]
24	Kevin L. Howe	[8] [11]
25	Lukas Käll	[26] [30]
26	Ajay Khanna	[15] [28]
27	Martin Klammer	[36]
28	Anders Krogh	[5] [26] [30]
29	Timo Lassmann	[24] [27] [28]
30	Gang Liu	[29]
31	Mhairi Marshall	[11] [15] [28]
32	José David Martín-Guerrero	[19]
33	Jaina Mistry	[28] [32]
34	Simon Moxon	[15] [28]
35	Kevin P. O'Brien	[20]
36	Gabriel Östlund	[33]
37	Raf M. Podowski	[9]
38	N. J. Raat	[1]
39	Maido Remm	[20]
40	Sanjit Roopra	[36]
41	Stephen John Sammut	[32]
42	Benjamin Schuster-Böckler	[28]
43	Antonio J. Serrano-López	[19]
44	Erik Sjölund	[33]
45	Ann-Charlotte Berglund Sonnhammer (Ann-Charlotte Berglund)	[33]
46	H. J. Stoffers	[1]
47	Christian E. V. Storm	[10] [12] [14]
48	David J. Studholme	[15]
49	Ivica Tamas	[29]
50	John Tate	[32]
51	Richard E. Warfinge	[22]
52	Martin Wennerberg	[18]
53	H. V. Westerhoff	[1]
54	Markus Wistrand	[16] [23]
55	Corin Yeats	[15]

Colors in the list of coauthors