2008 | ||
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37 | EE | Alistair M. Chalk, Erik L. L. Sonnhammer: siRNA specificity searching incorporating mismatch tolerance data. Bioinformatics 24(10): 1316-1317 (2008) |
36 | EE | Martin Klammer, Sanjit Roopra, Erik L. L. Sonnhammer: jSquid: a Java applet for graphical on-line network exploration. Bioinformatics 24(12): 1467-1468 (2008) |
35 | EE | Kristoffer Forslund, Erik L. L. Sonnhammer: Predicting protein function from domain content. Bioinformatics 24(15): 1681-1687 (2008) |
34 | EE | Kristoffer Forslund, Erik L. L. Sonnhammer: Predicting protein function from domain content. Bioinformatics 24(19): 2275 (2008) |
33 | EE | Ann-Charlotte Berglund, Erik Sjölund, Gabriel Östlund, Erik L. L. Sonnhammer: InParanoid 6: eukaryotic ortholog clusters with inparalogs. Nucleic Acids Research 36(Database-Issue): 263-266 (2008) |
32 | EE | Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008) |
2007 | ||
31 | EE | Volker Hollich, Erik L. L. Sonnhammer: PfamAlyzer: domain-centric homology search. Bioinformatics 23(24): 3382-3383 (2007) |
30 | EE | Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research 35(Web-Server-Issue): 429-432 (2007) |
2006 | ||
29 | EE | Andrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer: Automatic clustering of orthologs and inparalogs shared by multiple proteomes. ISMB (Supplement of Bioinformatics) 2006: 9-15 |
28 | EE | Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006) |
27 | EE | Timo Lassmann, Erik L. L. Sonnhammer: Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. Nucleic Acids Research 34(Web-Server-Issue): 596-599 (2006) |
2005 | ||
26 | EE | Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257 |
25 | EE | Erik L. L. Sonnhammer, Volker Hollich: Scoredist: A simple and robust protein sequence distance estimator. BMC Bioinformatics 6: 108 (2005) |
24 | EE | Timo Lassmann, Erik L. L. Sonnhammer: Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 6: 298 (2005) |
23 | EE | Markus Wistrand, Erik L. L. Sonnhammer: Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. BMC Bioinformatics 6: 99 (2005) |
22 | EE | Alistair M. Chalk, Richard E. Warfinge, Patrick Georgii-Hemming, Erik L. L. Sonnhammer: siRNAdb: a database of siRNA sequences. Nucleic Acids Research 33(Database-Issue): 131-134 (2005) |
21 | EE | Saraswathi Abhiman, Erik L. L. Sonnhammer: FunShift: a database of function shift analysis on protein subfamilies. Nucleic Acids Research 33(Database-Issue): 197-200 (2005) |
20 | EE | Kevin P. O'Brien, Maido Remm, Erik L. L. Sonnhammer: Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Research 33(Database-Issue): 476-480 (2005) |
2004 | ||
19 | EE | Gustavo Camps-Valls, Alistair M. Chalk, Antonio J. Serrano-López, José David Martín-Guerrero, Erik L. L. Sonnhammer: Profiled support vector machines for antisense oligonucleotide efficacy prediction. BMC Bioinformatics 5: 135 (2004) |
18 | EE | Alistair M. Chalk, Martin Wennerberg, Erik L. L. Sonnhammer: Sfixem - graphical sequence feature display in Java. Bioinformatics 20(15): 2488-2490 (2004) |
17 | EE | Sven Ekdahl, Erik L. L. Sonnhammer: ChromoWheel: a new spin on eukaryotic chromosome visualization. Bioinformatics 20(4): (2004) |
16 | EE | Markus Wistrand, Erik L. L. Sonnhammer: Transition Priors for Protein Hidden Markov Models: An Empirical Study towards Maximum Discrimination. Journal of Computational Biology 11(1): 181-193 (2004) |
15 | Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004) | |
2002 | ||
14 | Christian E. V. Storm, Erik L. L. Sonnhammer: Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics 18(1): 92-99 (2002) | |
13 | Alistair M. Chalk, Erik L. L. Sonnhammer: Computational antisense oligo prediction with a neural network model. Bioinformatics 18(12): 1567-1575 (2002) | |
12 | Volker Hollich, Christian E. V. Storm, Erik L. L. Sonnhammer: OrthoGUI: graphical presentation of Orthostrapper results. Bioinformatics 18(9): 1272-1273 (2002) | |
11 | Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002) | |
2001 | ||
10 | Christian E. V. Storm, Erik L. L. Sonnhammer: NIFAS: visual analysis of domain evolution in proteins. Bioinformatics 17(4): 343-348 (2001) | |
9 | Raf M. Podowski, Erik L. L. Sonnhammer: MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs. Bioinformatics 17(7): 656-657 (2001) | |
2000 | ||
8 | Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000) | |
1999 | ||
7 | Arne Elofsson, Erik L. L. Sonnhammer: A comparison of sequence and structure protein domain families as a basis for structural genomics. Bioinformatics 15(6): 480-500 (1999) | |
6 | Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999) | |
1998 | ||
5 | Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh: A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182 | |
4 | Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998) | |
1994 | ||
3 | Erik L. L. Sonnhammer, Richard Durbin: An Expert System for Processing Sequence Homology Data. ISMB 1994: 363-368 | |
2 | Erik L. L. Sonnhammer, Richard Durbin: A workbench for large-scale sequence homology analysis. Computer Applications in the Biosciences 10(3): 301-307 (1994) | |
1992 | ||
1 | H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, H. V. Westerhoff: METASIM: object-oriented modelling of cell regulation. Computer Applications in the Biosciences 8(5): 443-449 (1992) |