Volume 3,
Number 1,
January 2006
- Dan Gusfield:
State of the Journal.
1
Electronic Edition (ACM DL) BibTeX
- John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra, Jaakko Astola:
Jointly Analyzing Gene Expression and Copy Number Data in Breast Cancer Using Data Reduction Models.
2-16
Electronic Edition (ACM DL) BibTeX
- Rafael Sebastian, María Elena Díaz, Guillermo Ayala, Kresimir Letinic, Jose Moncho-Bogani, Derek Toomre:
Spatio-Temporal Analysis of Constitutive Exocytosis in Epithelial Cells.
17-32
Electronic Edition (ACM DL) BibTeX
- Eli Hershkovitz, Guillermo Sapiro, Allen Tannenbaum, Loren Dean Williams:
Statistical Analysis of RNA Backbone.
33-46
Electronic Edition (ACM DL) BibTeX
- Zaher Dawy, Bernhard Goebel, Joachim Hagenauer, Christophe Andreoli, Thomas Meitinger, Jakob C. Mueller:
Gene Mapping and Marker Clustering Using Shannon's Mutual Information.
47-56
Electronic Edition (ACM DL) BibTeX
- John K. Goutsias:
A Hidden Markov Model for Transcriptional Regulation in Single Cells.
57-71
Electronic Edition (ACM DL) BibTeX
- Luis Rueda, Vidya Vidyadharan:
A Hill-Climbing Approach for Automatic Gridding of cDNA Microarray Images.
72-83
Electronic Edition (ACM DL) BibTeX
- Charles Semple, Mike A. Steel:
Unicyclic Networks: Compatibility and Enumeration.
84-91
Electronic Edition (ACM DL) BibTeX
- Sébastien Roch:
A Short Proof that Phylogenetic Tree Reconstruction by Maximum Likelihood Is Hard.
92-94
Electronic Edition (ACM DL) BibTeX
Volume 3,
Number 2,
April-June 2006
Editorial
Papers
- Wei Chu, Zoubin Ghahramani, Alexei Podtelezhnikov, David L. Wild:
Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction.
98-113
Electronic Edition (link) BibTeX
- Samuel A. Danziger, Sanjay Joshua Swamidass, Jue Zeng, Lawrence R. Dearth, Qiang Lu, Jonathan H. Chen, Jianlin Cheng, Vinh P. Hoang, Hiroto Saigo, Ray Luo, Pierre Baldi, Rainer K. Brachmann, Richard H. Lathrop:
Functional Census of Mutation Sequence Spaces: The Example of p53 Cancer Rescue Mutants.
114-125
Electronic Edition (link) BibTeX
- Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences.
126-140
Electronic Edition (link) BibTeX
- Daniel G. Brown, Ian M. Harrower:
Integer Programming Approaches to Haplotype Inference by Pure Parsimony.
141-154
Electronic Edition (link) BibTeX
- Marc Vass, Clifford A. Shaffer, Naren Ramakrishnan, Layne T. Watson, John J. Tyson:
The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models.
155-164
Electronic Edition (link) BibTeX
- Duhong Chen, Oliver Eulenstein, David Fernández-Baca, Michael Sanderson:
Minimum-Flip Supertrees: Complexity and Algorithms.
165-173
Electronic Edition (link) BibTeX
- Petteri Sevon, Hannu Toivonen, Vesa Ollikainen:
TreeDT: Tree Pattern Mining for Gene Mapping.
174-185
Electronic Edition (link) BibTeX
Short Paper
Volume 3,
Number 3,
July-September 2006
Papers
- Petros Daras, Dimitrios Zarpalas, Apostolos Axenopoulos, Dimitrios Tzovaras, Michael G. Strintzis:
Three-Dimensional Shape-Structure Comparison Method for Protein Classification.
193-207
Electronic Edition (link) BibTeX
- Weichuan Yu, Xiaoye Li, Junfeng Liu, Baolin Wu, Kenneth R. Williams, Hongyu Zhao:
Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach.
208-219
Electronic Edition (link) BibTeX
- Osman Abul, Reda Alhajj, Faruk Polat:
A Powerful Approach for Effective Finding of Significantly Differentially Expressed Genes.
220-231
Electronic Edition (link) BibTeX
- Radhakrishnan Nagarajan, Meenakshi Upreti:
Correlation Statistics for cDNA Microarray Image Analysis.
232-238
Electronic Edition (link) BibTeX
- Yun S. Song, Rune B. Lyngsø, Jotun Hein:
Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics.
239-251
Electronic Edition (link) BibTeX
- Matti Pirinen, Dario Gasbarra:
Finding Consistent Gene Transmission Patterns on Large and Complex Pedigrees.
252-262
Electronic Edition (link) BibTeX
- Mihail Popescu, James M. Keller, Joyce A. Mitchell:
Fuzzy Measures on the Gene Ontology for Gene Product Similarity.
263-274
Electronic Edition (link) BibTeX
- Matthias Bernt, Daniel Merkle, Martin Middendorf:
Genome Rearrangement Based on Reversals that Preserve Conserved Intervals.
275-288
Electronic Edition (link) BibTeX
- Vincent Berry, François Nicolas:
Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems.
289-302
Electronic Edition (link) BibTeX
- Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail:
Islands of Tractability for Parsimony Haplotyping.
303-311
Electronic Edition (link) BibTeX
- Chaolin Zhang, Xuesong Lu, Xuegong Zhang:
Significance of Gene Ranking for Classification of Microarray Samples.
312-320
Electronic Edition (link) BibTeX
Volume 3,
Number 4,
October-December 2006
- Rita Casadio:
Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics -- Part 1.
321-322
Electronic Edition (link) BibTeX
- Sagi Snir, Satish Rao:
Using Max Cut to Enhance Rooted Trees Consistency.
323-333
Electronic Edition (link) BibTeX
- Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Hai-son Le, Vijaya Ramachandran, Tandy Warnow:
Pattern Identification in Biogeography.
334-346
Electronic Edition (link) BibTeX
- Sebastian Wernicke:
Efficient Detection of Network Motifs.
347-359
Electronic Edition (link) BibTeX
- Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot:
Motif Search in Graphs: Application to Metabolic Networks.
360-368
Electronic Edition (link) BibTeX
- Isaac Elias, Tzvika Hartman:
A 1.375-Approximation Algorithm for Sorting by Transpositions.
369-379
Electronic Edition (link) BibTeX
- Anthony Labarre:
New Bounds and Tractable Instances for the Transposition Distance.
380-394
Electronic Edition (link) BibTeX
- Michael Sammeth, Jens Stoye:
Comparing Tandem Repeats with Duplications and Excisions of Variable Degree.
395-407
Electronic Edition (link) BibTeX
- Yonatan Bilu, Pankaj K. Agarwal, Rachel Kolodny:
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons.
408-422
Electronic Edition (link) BibTeX
- Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment.
423-432
Electronic Edition (link) BibTeX
Copyright © Sun May 17 00:23:22 2009
by Michael Ley (ley@uni-trier.de)
