2008 |
38 | EE | Dominique Lavenier:
Ordered index seed algorithm for intensive DNA sequence comparison.
IPDPS 2008: 1-8 |
37 | EE | Xiaochun Ye,
Van Hoa Nguyen,
Dominique Lavenier,
Dongrui Fan:
Efficient Parallelization of a Protein Sequence Comparison Algorithm on Manycore Architecture.
PDCAT 2008: 167-170 |
36 | EE | Van Hoa Nguyen,
Dominique Lavenier:
Speeding up subset seed algorithm for intensive protein sequence comparison.
RIVF 2008: 57-63 |
35 | EE | Xianyang Jiang,
Dominique Lavenier,
Stephen S.-T. Yau:
Coding Region Prediction Based on a Universal DNA Sequence Representation Method.
Journal of Computational Biology 15(10): 1237-1256 (2008) |
2007 |
34 | EE | Pierre Peterlongo,
Laurent Noé,
Dominique Lavenier,
Gilles Georges,
Julien Jacques,
Gregory Kucherov,
Mathieu Giraud:
Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware.
PPAM 2007: 1240-1248 |
33 | EE | Mathieu Giraud,
Philippe Veber,
Dominique Lavenier:
Path-Equivalent Developments in Acyclic Weighted Automata.
Int. J. Found. Comput. Sci. 18(4): 799-811 (2007) |
32 | EE | Dominique Lavenier,
Gilles Georges,
X. Liu:
A Reconfigurable Index FLASH Memory tailored to Seed-Based Genomic Sequence Comparison Algorithms.
VLSI Signal Processing 48(3): 255-269 (2007) |
2006 |
31 | EE | Mathieu Giraud,
Philippe Veber,
Dominique Lavenier:
Path-Equivalent Removals of epsilon-transitions in a Genomic Weighted Finite Automaton.
CIAA 2006: 23-33 |
30 | EE | Sébastien Tempel,
Mathieu Giraud,
Dominique Lavenier,
Israel-César Lerman,
Anne-Sophie Valin,
Ivan Couée,
Abdelhak El Amrani,
Jacques Nicolas:
Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.
Bioinformatics 22(16): 1948-1954 (2006) |
2005 |
29 | | Nicolas Ventroux,
Frédéric Blanc,
Dominique Lavenier:
A Low Complex Scheduling Algorithm for Multi-processor System-on-Chip.
Parallel and Distributed Computing and Networks 2005: 540-545 |
28 | EE | Rumen Andonov,
Dominique Lavenier,
Philippe Veber,
Nicola Yanev:
Dynamic programming for LR-PCR segmentation of bacterium genomes.
Concurrency and Computation: Practice and Experience 17(14): 1657-1668 (2005) |
27 | | Mathieu Giraud,
Dominique Lavenier:
Dealing with Hardware Space Limits when Removing Epsilon-Transitions in a Genomic Weighted Finite Automaton.
Journal of Automata, Languages and Combinatorics 10(2/3): 265-285 (2005) |
26 | EE | Stéphane Guyetant,
Mathieu Giraud,
Ludovic L'Hours,
Steven Derrien,
Stéphane Rubini,
Dominique Lavenier,
Frédéric Raimbault:
Cluster of re-configurable nodes for scanning large genomic banks.
Parallel Computing 31(1): 73-96 (2005) |
25 | | Raphaël David,
Dominique Lavenier,
Sébastien Pillement:
Du microprocesseur au circuit FPGA. Une analyse sous l'angle de la reconfiguration.
Technique et Science Informatiques 24(4): 395-422 (2005) |
24 | EE | Mathieu Giraud,
Stéphane Guyetant,
Dominique Lavenier:
Encodage linéaire d'automates pondérés. Filtrage de motifs génomiques et application sur l'architecture prototype R-disk.
Technique et Science Informatiques 24(6): 703-724 (2005) |
2004 |
23 | EE | Mathieu Giraud,
Dominique Lavenier:
Linear Encoding Scheme for Weighted Finite Automata.
CIAA 2004: 146-155 |
22 | EE | Rumen Andonov,
Dominique Lavenier,
Philippe Veber,
Nicola Yanev:
Dynamic Programming for LR-PCR Segmention of Bacterium Genomes.
IPDPS 2004 |
2003 |
21 | | Dominique Lavenier,
Stéphane Guyetant,
Steven Derrien,
Stéphane Rubini:
A Reconfigurable Parallel Disk System for Filtering Genomic Banks.
Engineering of Reconfigurable Systems and Algorithms 2003: 154-166 |
20 | EE | Frédéric Raimbault,
Dominique Lavenier:
ROOM. Des machines reconfigurables orientées objet pour les applications spécifiques.
Technique et Science Informatiques 22(6): 759-782 (2003) |
19 | EE | Maya Gokhale,
Janette Frigo,
Kevin McCabe,
James Theiler,
Christophe Wolinski,
Dominique Lavenier:
Experience with a Hybrid Processor: K-Means Clustering.
The Journal of Supercomputing 26(2): 131-148 (2003) |
2001 |
18 | EE | Janette Frigo,
Maya Gokhale,
Dominique Lavenier:
Evaluation of the streams-C C-to-FPGA compiler: an applications perspective.
FPGA 2001: 134-140 |
17 | EE | Loïc Lagadec,
Dominique Lavenier,
Erwan Fabiani,
Bernard Pottier:
Placing, Routing, and Editing Virtual FPGAs.
FPL 2001: 357-366 |
16 | | Yan Solihin,
Kirk W. Cameron,
Yong Luo,
Dominique Lavenier,
Maya Gokhale:
Mutable Functional Units and Their Applications on Microprocessors.
ICCD 2001: 234-239 |
2000 |
15 | EE | Erwan Fabiani,
Dominique Lavenier:
Placement of Linear Arrays.
FPL 2000: 849-852 |
14 | EE | Dominique Lavenier:
An FPGA systolic array using pseudo-random bit generators for computing Goldbach partitions.
Integration 30(1): 77-89 (2000) |
1998 |
13 | EE | Dominique Lavenier,
Yannick Saouter:
Computing Goldbach Partitions Using Pseudo-random Bit Generator Operators on a FPFA Systolic Array.
FPL 1998: 316-325 |
1997 |
12 | | Dominique Lavenier,
Jean-Lin Pacherie:
Parallel Processing for Scanning Genomic Data-Bases.
PARCO 1997: 81-88 |
11 | | Pascale Guerdoux-Jamet,
Dominique Lavenier:
SAMBA: hardware accelerator for biological sequence comparison.
Computer Applications in the Biosciences 13(6): 609-615 (1997) |
1996 |
10 | | Pascale Guerdoux-Jamet,
Dominique Lavenier,
Charles Wagner,
Patrice Quinton:
Design and Implementation of a Parallel Architecture for Biological Sequence Comparison.
Euro-Par, Vol. I 1996: 11-24 |
9 | EE | Dominique Lavenier:
Dedicated Hardware for Biological Sequence Comparison.
J. UCS 2(2): 77-86 (1996) |
8 | EE | Roderick McConnell,
Dominique Lavenier:
Prototyping of VLSI components from a formal specification.
VLSI Signal Processing 12(2): 177-186 (1996) |
1995 |
7 | EE | Pascale Guerdoux-Jamet,
Dominique Lavenier:
Systolic Filter for Fast DNA Similarity Search.
ASAP 1995: 145-156 |
6 | EE | Dominique Lavenier,
Frédéric Raimbault,
Patrice Frison:
I/O and computation overlap on SIMD systolic arrays.
VLSI Signal Processing 9(3): 153-165 (1995) |
1994 |
5 | | Patrice Frison,
François Charot,
Eric Gautrin,
Dominique Lavenier,
Patrice Quinton,
Frédéric Raimbault,
Charles Wagner:
From Equations to Hardware. Towards the Systematic Mapping of Algorithms onto Parallel Architectures.
IJPRAI 8(2): 417-438 (1994) |
1992 |
4 | | François Charot,
Patrice Frison,
Eric Gautrin,
Dominique Lavenier,
Patrice Quinton,
Charles Wagner:
From Equations to Hardware: Towards Systematic Mapping of Algorithms onto Parallel Architectures.
ICPIA 1992: 1-15 |
1991 |
3 | | Patrice Frison,
Dominique Lavenier:
Experience in the design of paralle processor arrays.
Algorithms and Parallel VLSI Architectures 1991: 233-242 |
2 | | Patrice Frison,
Dominique Lavenier:
A Fully Integrated Systolic Spelling Co-Processor.
VLSI 1991: 257-266 |
1988 |
1 | | Patrice Frison,
Dominique Lavenier:
Fast Machine for Prototyping String Correction Algorithms.
RIAO 1988: 1085-1100 |