5. ISBRA 2009: Fort Lauderdale, FL, USA

• Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak:
  Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). 1-4
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• Matej Holec, Filip Zelezný, Jirí Kléma, Jakub Tolar:
  Integrating Multiple-Platform Expression Data through Gene Set Features. 5-17
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• Brian E. Howard, Beate Sick, Steffen Heber:
  Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression. 18-27
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• Stefan Gremalschi, Gulsah Altun, Irina Astrovskaya, Alexander Zelikovsky:
  Mean Square Residue Biclustering with Missing Data and Row Inversions. 28-39
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• Peter Larsen, Yang Dai:
  Using Gene Expression Modeling to Determine Biological Relevance of Putative Regulatory Networks. 40-51
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• Guillaume Blin, Florian Sikora, Stéphane Vialette:
  Querying Protein-Protein Interaction Networks. 52-62
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• Mahesh Visvanathan, Bernhard Pfeifer, Christian Baumgartner, Bernhard Tilg, Gerald H. Lushington:
  Integrative Approach for Combining TNFa-NFkB Mathematical Model to a Protein Interaction Connectivity Map. 63-74
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• Min Li, Jianxin Wang, Jianer Chen, Yi Pan:
  Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering Coefficient. 75-86
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• Nicholas F. Tsinoremas:
  Bioinformatics Challenges in Translational Research. 87
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• Balaji Venkatachalam, Jim Apple, Katherine St. John, Dan Gusfield:
  Untangling Tanglegrams: Comparing Trees by Their Drawings. 88-99
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• Seung-Jin Sul, Tiffani L. Williams:
  An Experimental Analysis of Consensus Tree Algorithms for Large-Scale Tree Collections. 100-111
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• Lichen Bao, Sergey Bereg:
  Counting Faces in Split Networks. 112-123
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• Alexander Kister:
  Relationship between Amino Acids Sequences and Protein Structures: Folding Patterns and Sequence Patterns. 124-134
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• Sanguthevar Rajasekaran, Sahar Al Seesi, Reda A. Ammar:
  Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots. 135-147
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• Vamsi Kundeti, Sanguthevar Rajasekaran:
  Efficient Algorithms for Self Assembling Triangular and Other Nano Structures. 148-158
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• Esko Ukkonen:
  Motif Construction from High-Throughput SELEX Data. 159
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• Adriana Muñoz, David Sankoff:
  Rearrangement Phylogeny of Genomes in Contig Form. 160-172
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• Aïda Ouangraoua, Frédéric Boyer, Andrew McPherson, Eric Tannier, Cedric Chauve:
  Prediction of Contiguous Regions in the Amniote Ancestral Genome. 173-185
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• Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi:
  Pure Parsimony Xor Haplotyping. 186-197
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• Allen Holder, Thomas Langley:
  A Decomposition of the Pure Parsimony Haplotyping Problem. 198-208
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• Yufeng Wu:
  Exact Computation of Coalescent Likelihood under the Infinite Sites Model. 209-220
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• Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu:
  Imputation-Based Local Ancestry Inference in Admixed Populations. 221-233
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• Shamil R. Sunyaev:
  Interpreting Population Sequencing Data. 234-235
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• Juntao Li, Fajrian Yunus, Zhu Lei, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy:
  Modeling and Visualizing Heterogeneity of Spatial Patterns of Protein-DNA Interaction from High-Density Chromatin Precipitation Mapping Data. 236-247
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• Matthew Hayes, Jing Li:
  A Linear-Time Algorithm for Analyzing Array CGH Data Using Log Ratio Triangulation. 248-259
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• Jihye Kim, Sihui Zhao, Brian E. Howard, Steffen Heber:
  Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing. 260-271
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• Sihui Zhao, Jihye Kim, Steffen Heber:
  Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates. 272-283
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• Valentina Sulimova, Vadim Mottl, Boris Mirkin, Ilya B. Muchnik, Casimir A. Kulikowski:
  A Class of Evolution-Based Kernels for Protein Homology Analysis: A Generalization of the PAM Model. 284-296
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• Miguel A. Jiménez-Montaño, Matthew He:
  Irreplaceable Amino Acids and Reduced Alphabets in Short-Term and Directed Protein Evolution. 297-309
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• András Bánhalmi, Róbert Busa-Fekete, Balázs Kégl:
  A One-Class Classification Approach for Protein Sequences and Structures. 310-322
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• Na'el Abu-halaweh, Robert Harrison:
  Prediction and Classification of Real and Pseudo MicroRNA Precursors via Data Fuzzification and Fuzzy Decision Trees. 323-334
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