4. WABI 2004: Bergen, Norway

Inge Jonassen, Junhyong Kim (Eds.): Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings. Lecture Notes in Computer Science 3240 Springer 2004, ISBN 3-540-23018-1 BibTeX

@proceedings{DBLP:conf/wabi/2004,
  editor    = {Inge Jonassen and
               Junhyong Kim},
  title     = {Algorithms in Bioinformatics, 4th International Workshop, WABI
               2004, Bergen, Norway, September 17-21, 2004, Proceedings},
  booktitle = {WABI},
  publisher = {Springer},
  series    = {Lecture Notes in Computer Science},
  volume    = {3240},
  year      = {2004},
  isbn      = {3-540-23018-1},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret:
Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. 1-13
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Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cedric Chauve:
Reconstructing Ancestral Gene Orders Using Conserved Intervals. 14-25
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Martin Figeac, Jean-Stéphane Varré:
Sorting by Reversals with Common Intervals. 26-37
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Jens Gramm:
A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns. 38-49
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Tzvika Hartman, Roded Sharan:
A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals. 50-61
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Miklós Csürös:
Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract). 62-73
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Manikandan Narayanan, Richard M. Karp:
Gapped Local Similarity Search with Provable Guarantees. 74-86
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Alberto Apostolico, Cinzia Pizzi:
Monotone Scoring of Patterns with Mismatches: (Extended Abstract). 87-98
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Morris Michael, Christoph Dieterich, Jens Stoye:
Suboptimal Local Alignments Across Multiple Scoring Schemes. 99-110
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Uri Keich, Niranjan Nagarajan:
A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. 111-122
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Benny Chor, Tamir Tuller:
Adding Hidden Nodes to Gene Networks (Extended Abstract). 123-134
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Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini:
Joint Analysis of DNA Copy Numbers and Gene Expression Levels. 135-146
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Daichi Shigemizu, Osamu Maruyama:
Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting. 147-158
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Lev Soinov, Alexander Kanapin, Misha Kapushesky:
Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation. 159-169
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Daniel G. Brown:
Multiple Vector Seeds for Protein Alignment. 170-181
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Stefan Balev:
Solving the Protein Threading Problem by Lagrangian Relaxation. 182-193
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Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson:
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. 194-205
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Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira:
ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences. 206-217
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Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph:
Local Search Heuristic for Rigid Protein Docking. 218-229
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Nathan Edwards, Ross Lippert:
Sequence Database Compression for Peptide Identification from Tandem Mass Spectra. 230-241
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Jingwu He, Alexander Zelikovsky:
Linear Reduction for Haplotype Inference. 242-253
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Daniel G. Brown, Ian M. Harrower:
A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis. 254-265
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Alessandro Panconesi, Mauro Sozio:
Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction. 266-277
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Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao:
Approximation Algorithms for the Selection of Robust Tag SNPs. 278-289
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Behshad Behzadi, Jean-Marc Steyaert:
The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach. 290-301
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Jesper Jansson, See-Kiong Ng, Wing-Kin Sung, Hugo Willy:
A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment. 302-313
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Daniel G. Brown, Alexander K. Hudek:
New Algorithms for Multiple DNA Sequence Alignment. 314-325
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Mukund Sundararajan, Michael Brudno, Kerrin Small, Arend Sidow, Serafim Batzoglou:
Chaining Algorithms for Alignment of Draft Sequence. 326-337
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Guoliang Li, Tze-Yun Leong, Louxin Zhang:
Translation Initiation Sites Prediction with Mixture Gaussian Models. 338-349
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Tanya Y. Berger-Wolf:
Online Consensus and Agreement of Phylogenetic Trees. 350-361
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Maciej Liskiewicz, Hemant J. Purohit, Dhananjay V. Raje:
Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity. 362-373
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Denis Bertrand, Olivier Gascuel:
Topological Rearrangements and Local Search Method for Tandem Duplication Trees. 374-387
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Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel:
Phylogenetic Super-networks from Partial Trees. 388-399
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Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang:
Genome Identification and Classification by Short Oligo Arrays. 400-411
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Julien Allali, Marie-France Sagot:
Novel Tree Edit Operations for RNA Secondary Structure Comparison. 412-425
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Brona Brejová, Daniel G. Brown, Tomás Vinar:
The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. 426-437
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Sing-Hoi Sze, Songjian Lu, Jianer Chen:
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. 438-449
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Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano:
Finding Optimal Pairs of Patterns. 450-462
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Shunsuke Inenaga, Teemu Kivioja, Veli Mäkinen:
Finding Missing Patterns. 463-474
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