8. PARA 2006:
Umeå,
Sweden
Bo Kågström, Erik Elmroth, Jack Dongarra, Jerzy Wasniewski (Eds.):
Applied Parallel Computing. State of the Art in Scientific Computing, 8th International Workshop, PARA 2006, Umeå, Sweden, June 18-21, 2006, Revised Selected Papers.
Lecture Notes in Computer Science 4699 Springer 2007, ISBN 978-3-540-75754-2 BibTeX
Keynote Papers
- Alfredo Buttari, Jack Dongarra, Jakub Kurzak, Julien Langou, Piotr Luszczek, Stanimire Tomov:
The Impact of Multicore on Math Software.
1-10
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- James Demmel, Jack Dongarra, Beresford N. Parlett, William Kahan, Ming Gu, David Bindel, Yozo Hida, Xiaoye S. Li, Osni Marques, E. Jason Riedy, Christof Vömel, Julien Langou, Piotr Luszczek, Jakub Kurzak, Alfredo Buttari, Julie Langou, Stanimire Tomov:
Prospectus for the Next LAPACK and ScaLAPACK Libraries.
11-23
Electronic Edition (link) BibTeX
- Per Christian Hansen, Toke Koldborg Jensen:
Large-Scale Methods in Image Deblurring.
24-35
Electronic Edition (link) BibTeX
- Hans Petter Langtangen:
A Case Study in High-Performance Mixed-Language Programming.
36-49
Electronic Edition (link) BibTeX
Minisymposia Papers
Stretching Time and Length Scales in Biomolecular Modelling
- Aatto Laaksonen:
Stretching Time and Length Scales in Biomolecular Modelling: Minisymposium Abstract.
50
Electronic Edition (link) BibTeX
- K. Gillis, J. Vatamanu, M. S. Gulam Razul, Peter G. Kusalik:
Averaged Configurations from Molecular Dynamics Simulations.
51-58
Electronic Edition (link) BibTeX
- Erik Johansson, Peter Ahlström:
Atomistic Simulation Studies of Polymers and Water.
59-65
Electronic Edition (link) BibTeX
- Christophe Labbez, Bo Jönsson:
A New Monte Carlo Method for the Titration of Molecules and Minerals.
66-72
Electronic Edition (link) BibTeX
- Mikael Lund:
Coarse Graining Biomolecular Systems.
73-81
Electronic Edition (link) BibTeX
- Mikael Peräkylä:
Molecular Dynamics Simulation Studies on the Modulation of Vitamin D Receptor Activity by Agonists and Antagonists.
82-89
Electronic Edition (link) BibTeX
- Emanuel H. Rubensson, Elias Rudberg, Pawel Salek:
Sparse Matrix Algebra for Quantum Modeling of Large Systems.
90-99
Electronic Edition (link) BibTeX
- Yaoquan Tu, Lennart Nilsson, Aatto Laaksonen:
A Highly Efficient Ab Initio Tight-Binding-Like Approximate Density-Functional Quantum Mechanical Method.
100-108
Electronic Edition (link) BibTeX
- David van der Spoel, Alexandra Patriksson, M. Marvin Seibert:
Protein Folding Properties from Molecular Dynamics Simulations.
109-115
Electronic Edition (link) BibTeX
Recent Advances in Dense Linear Algebra
CFD Applications for High Performance Computing
HPC Environments:
Visualization and Parallelization Tools
- Anne C. Elster, Otto J. Anshus:
HPC Environments - Visualization and Parallelization Tools: Minisymposium Abstract.
177
Electronic Edition (link) BibTeX
- John Markus Bjørndalen, Otto J. Anshus:
Trusting Floating Point Benchmarks - Are Your Benchmarks Really Data Independent?
178-188
Electronic Edition (link) BibTeX
- Espen Skjelnes Johnsen, John Markus Bjørndalen, Otto J. Anshus:
CoMPI- Configuration of Collective Operations in LAM/MPI Using the Scheme Programming Language.
189-197
Electronic Edition (link) BibTeX
- Jan Christian Meyer, Anne C. Elster:
A Load Balancing Strategy for Computations on Large, Read-Only Data Sets.
198-207
Electronic Edition (link) BibTeX
- Thorvald Natvig, Anne C. Elster:
Automatic and Transparent Optimizations of an Application's MPI Communication.
208-217
Electronic Edition (link) BibTeX
- Ingar Saltvik, Anne C. Elster, Henrik R. Nagel:
Parallel Methods for Real-Time Visualization of Snow.
218-227
Electronic Edition (link) BibTeX
- Daniel Stødle, John Markus Bjørndalen, Otto J. Anshus:
Support for Collaboration, Visualization and Monitoring of Parallel Applications Using Shared Windows.
228-238
Electronic Edition (link) BibTeX
Tools,
Frameworks and Applications for High Performance Computing
- Osni Marques:
Tools, Frameworks and Applications for High Performance Computing: Minisymposium Abstract.
239
Electronic Edition (link) BibTeX
- Peter Arbenz, G. Harry van Lenthe, Uche Mennel, Ralph Müller, Marzio Sala:
Multi-level mu -Finite Element Analysis for Human Bone Structures.
240-250
Electronic Edition (link) BibTeX
- L. Anthony Drummond, Vicente Galiano Ibarra, Violeta Migallón, José Penadés:
High-Level User Interfaces for the DOE ACTS Collection.
251-259
Electronic Edition (link) BibTeX
- John R. Gilbert, Steve Reinhardt, Viral Shah:
High-Performance Graph Algorithms from Parallel Sparse Matrices.
260-269
Electronic Edition (link) BibTeX
- Lutz Gross, Ben Cumming, Ken Steube, Dion Weatherley:
A Python Module for PDE-Based Numerical Modelling.
270-279
Electronic Edition (link) BibTeX
- Zsolt I. Lázár, Lehel István Kovács, Zoltán Máthé:
COMODI: Architecture for a Component-Based Scientific Computing System.
280-288
Electronic Edition (link) BibTeX
- Sameer Shende, Allen D. Malony, Alan Morris:
Workload Characterization Using the TAU Performance System.
289-296
Electronic Edition (link) BibTeX
Grid Data Management
- Siegfried Benkner, Heinz Stockinger:
Grid Data Management: Minisymposium Abstract.
297
Electronic Edition (link) BibTeX
- Siegfried Benkner, Gerhard Engelbrecht, Stuart E. Middleton, Mike Surridge:
Supporting SLA Negotiation for QoS-Enabled Simulation Services in a Medical Grid Environment.
298-308
Electronic Edition (link) BibTeX
- Brian A. Coghlan, Geoff Quigley, Soha Maad, Gabriele Pierantoni, John Ryan, Eamonn Kenny, David O'Callaghan:
A Transparent Grid Filesystem.
309-318
Electronic Edition (link) BibTeX
- Carmela Comito, Domenico Talia:
Grid Data Integration Based on Schema Mapping.
319-328
Electronic Edition (link) BibTeX
Simulations in Geophysics and Space Physics
- Mats Holmström, Kjell Rönnmark:
Simulations in Geophysics and Space Physics: Minisymposium Abstract.
329
Electronic Edition (link) BibTeX
- Francisco Almeida, Carlos Delgado, Ramón J. García López, Francisco de Sande:
Parallelization of a Public Image Restoration Algorithm.
330-339
Electronic Edition (link) BibTeX
- Werner Benger, Shalini Venkataraman, Amanda Long, Gabrielle Allen, Stephen David Beck, Maciej Brodowicz, Jon MacLaren, Edward Seidel:
Visualizing Katrina - Merging Computer Simulations with Observations.
340-350
Electronic Edition (link) BibTeX
- Pablo López, Antonio J. Dorta, Evencio Mediavilla, Francisco de Sande:
Generation of Microlensing Magnification Patterns with High Performance Computing Techniques.
351-360
Electronic Edition (link) BibTeX
- Madelene Jeanette Parviainen, Mark Eric Dieckmann, Padma Kant Shukla:
Phase Space Modulations in Magnetised Plasmas by a Mildly Relativistic Two-Stream Instability.
361-370
Electronic Edition (link) BibTeX
- Jörgen Vedin, Kjell Rönnmark:
Implementing a Particle-Fluid Model of Auroral Electrons.
371-379
Electronic Edition (link) BibTeX
Tools for Parallel Performance Analysis
- Felix Wolf:
Tools for Parallel Performance Analysis: Minisymposium Abstract.
380
Electronic Edition (link) BibTeX
- Genaro Costa, Anna Morajko, Tomàs Margalef, Emilio Luque:
Automatic Tuning in Computational Grids.
381-389
Electronic Edition (link) BibTeX
- Karl Fürlinger, Michael Gerndt:
Automated Performance Analysis Using ASL Performance Properties.
390-397
Electronic Edition (link) BibTeX
- Markus Geimer, Felix Wolf, Andreas Knüpfer, Bernd Mohr, Brian J. N. Wylie:
A Parallel Trace-Data Interface for Scalable Performance Analysis.
398-408
Electronic Edition (link) BibTeX
- Josep Jorba, Tomàs Margalef, Emilio Luque:
Search of Performance Inefficiencies in Message Passing Applications with KappaPI 2 Tool.
409-419
Electronic Edition (link) BibTeX
- Edmond Kereku, Michael Gerndt:
Automatic Monitoring of Memory Hierarchies in Threaded Applications with AMEBA.
420-429
Electronic Edition (link) BibTeX
- Andreas Knüpfer, Bernhard Voigt, Wolfgang E. Nagel, Hartmut Mix:
Visualization of Repetitive Patterns in Event Traces.
430-439
Electronic Edition (link) BibTeX
- Sameer Shende, Allen D. Malony, Alan Morris:
Optimization of Instrumentation in Parallel Performance Evaluation Tools.
440-449
Electronic Edition (link) BibTeX
- Hung-Hsun Su, Dan Bonachea, Adam Leko, Hans Sherburne, Max Billingsley, Alan D. George:
GASP! A Standardized Performance Analysis Tool Interface for Global Address Space Programming Models.
450-459
Electronic Edition (link) BibTeX
- Brian J. N. Wylie, Felix Wolf, Bernd Mohr, Markus Geimer:
Integrated Runtime Measurement Summarisation and Selective Event Tracing for Scalable Parallel Execution Performance Diagnosis.
460-469
Electronic Edition (link) BibTeX
Grids for Scientific Computing
- Oxana Smirnova:
Grids for Scientific Computing: Minisymposium Abstract.
470
Electronic Edition (link) BibTeX
- Paula Eerola, Tord Ekelöf, Mattias Ellert, Michael Grønager, John Renner Hansen, Sigve Haug, Josva Kleist, Aleksandr Konstantinov, Balázs Kónya, Farid Ould-Saada, Oxana Smirnova, Ferenc Szalai, Anders Wäänänen:
Roadmap for the ARC Grid Middleware.
471-479
Electronic Edition (link) BibTeX
- Sigve Haug, Farid Ould-Saada, Katarina Pajchel, Alexander L. Read:
Data Management for the World's Largest Machine.
480-488
Electronic Edition (link) BibTeX
- Roman Wyrzykowski, Norbert Meyer, Tomasz Olas, Lukasz Kuczynski, Bogdan Ludwiczak, Cezary Czaplewski, Stanislaw Oldziej:
Meta-computations on the CLUSTERIX Grid.
489-500
Electronic Edition (link) BibTeX
Simulations of Materials
Novel Data Formats and Algorithms for Dense Linear Algebra Computations
- Fred G. Gustavson, Jerzy Wasniewski:
Novel Data Formats and Algorithms for Dense Linear Algebra Computations: Minisymposium Abstract.
520
Electronic Edition (link) BibTeX
- Michael Bader, Christian Mayer:
Cache Oblivious Matrix Operations Using Peano Curves.
521-530
Electronic Edition (link) BibTeX
- Robert Granat, Isak Jonsson, Bo Kågström:
Recursive Blocked Algorithms for Solving Periodic Triangular Sylvester-Type Matrix Equations.
531-539
Electronic Edition (link) BibTeX
- Fred G. Gustavson, John A. Gunnels, James C. Sexton:
Minimal Data Copy for Dense Linear Algebra Factorization.
540-549
Electronic Edition (link) BibTeX
- Fred G. Gustavson, Lars Karlsson, Bo Kågström:
Three Algorithms for Cholesky Factorization on Distributed Memory Using Packed Storage.
550-559
Electronic Edition (link) BibTeX
- Fred G. Gustavson, Tadeusz Swirszcz:
In-Place Transposition of Rectangular Matrices.
560-569
Electronic Edition (link) BibTeX
- Fred G. Gustavson, Jerzy Wasniewski:
Rectangular Full Packed Format for LAPACK Algorithms Timings on Several Computers.
570-579
Electronic Edition (link) BibTeX
- José R. Herrero, Juan J. Navarro:
Using Non-canonical Array Layouts in Dense Matrix Operations.
580-588
Electronic Edition (link) BibTeX
- Przemyslaw Stpiczynski:
New Data Distribution for Solving Triangular Systems on Distributed Memory Machines.
589-597
Electronic Edition (link) BibTeX
- John K. Reid, Jennifer A. Scott:
The Design of a New Out-of-Core Multifrontal Solver.
598-607
Electronic Edition (link) BibTeX
- Alfredo Remón, Enrique S. Quintana-Ortí, Gregorio Quintana-Ortí:
Cholesky Factorization of Band Matrices Using Multithreaded BLAS.
608-616
Electronic Edition (link) BibTeX
- Tetsuya Sakurai, Yoshihisa Kodaki, Hiroto Tadano, Hiroaki Umeda, Yuichi Inadomi, Toshio Watanabe, Umpei Nagashima:
A Master-Worker Type Eigensolver for Molecular Orbital Computations.
617-625
Electronic Edition (link) BibTeX
Bioinformatics and Computational Biology
Scientific Visualization and HPC Applications
Software Tools for Parallel CFD Applications
Multi-scale Physics
Contributed Papers
Partial Differential Equations
- Juan A. Acebrón, Raúl Durán, Rafael Rico, Renato Spigler:
A New Domain Decomposition Approach Suited for Grid Computing.
744-753
Electronic Edition (link) BibTeX
- Torsten Adolph, Willi Schönauer:
Parallelization of the Mesh Refinement Algorithm of the FDEM Program Package.
754-763
Electronic Edition (link) BibTeX
- Gregory Karagiorgos, Petros Katsafados, Andreas Kontarinis, Nikolaos M. Missirlis, Filippos Tzaferis:
Load Balancing for the Numerical Solution of the Navier-Stokes Equations.
764-773
Electronic Edition (link) BibTeX
- Tallat M. Shafaat, Scott B. Baden:
A Method of Adaptive Coarsening for Compressing Scientific Datasets.
774-780
Electronic Edition (link) BibTeX
- Michael Spevak, René Heinzl, Philipp Schwaha, Siegfried Selberherr:
A Computational Framework for Topological Operations.
781-790
Electronic Edition (link) BibTeX
Grid Computing
- Jorge Andrade, Malin Andersen, Lisa Berglund, Jacob Odeberg:
Applications of Grid Computing in Genetics and Proteomics.
791-798
Electronic Edition (link) BibTeX
- Mario Antonioletti, Malcolm P. Atkinson, Neil P. Chue Hong, Bartosz Dobrzelecki, Alastair C. Hume, Mike Jackson, Kostas Karasavvas, Amy Krause, Jennifer M. Schopf, Tom Sugden, Elias Theocharopoulos:
Grid Enabling Your Data Resources with OGSA-DAI.
799-808
Electronic Edition (link) BibTeX
- Krzysztof Benedyczak, Aleksander Nowinski, Krzysztof Nowinski, Piotr Bala:
UniGrids Streaming Framework: Enabling Streaming for the New Generation of Grids.
809-818
Electronic Edition (link) BibTeX
- Jan Kwiatkowski, Marcin Pawlik, Gerard Frankowski, Kazimierz Balos, Roman Wyrzykowski, Konrad Karczewski:
Dynamic Clusters Available Under Clusterix Grid.
819-829
Electronic Edition (link) BibTeX
- Gabriele Pierantoni, Brian A. Coghlan, Eamonn Kenny:
Agent-Based Societies for the Sharing, Brokerage and Allocation of Grid Resources.
830-839
Electronic Edition (link) BibTeX
- Olaf Schneider, Frank Schmitz, Ivan Kondov, Thomas Brandel:
OpusIB - Grid Enabled Opteron Cluster with InfiniBand Interconnect.
840-849
Electronic Edition (link) BibTeX
- Rafael K. S. Silva, Marilton S. de Aguiar, César A. F. De Rose, Graçaliz Pereira Dimuro:
Extending the HPC-ICTM Geographical Categorization Model for Grid Computing.
850-859
Electronic Edition (link) BibTeX
Parallel Scientific Computing Algorithms
- Tamito Kajiyama, Akira Nukada, Reiji Suda, Hidehiko Hasegawa, Akira Nishida:
Distributed SILC: An Easy-to-Use Interface for MPI-Based Parallel Matrix Computation Libraries.
860-870
Electronic Edition (link) BibTeX
- Dries Kimpe, Andrea Lani, Tiago Quintino, Stefan Vandewalle, Stefaan Poedts, Herman Deconinck:
A Study of Real World I/O Performance in Parallel Scientific Computing.
871-881
Electronic Edition (link) BibTeX
- Carmen B. Navarrete, Susana Holgado, Eloy Anguiano:
Epitaxial Surface Growth with Local Interaction, Parallel and Non-parallel Simulations.
882-889
Electronic Edition (link) BibTeX
- Gerhard W. Zumbusch:
Data Dependence Analysis for the Parallelization of Numerical Tree Codes.
890-899
Electronic Edition (link) BibTeX
Linear Algebra
- Mats Aspnäs, Artur Signell, Jan Westerholm:
Efficient Assembly of Sparse Matrices Using Hashing.
900-907
Electronic Edition (link) BibTeX
- Ali Cevahir, Cevdet Aykanat, Ata Turk, Berkant Barla Cambazoglu:
A Web-Site-Based Partitioning Technique for Reducing Preprocessing Overhead of Parallel PageRank Computation.
908-918
Electronic Edition (link) BibTeX
- John A. Gunnels, Fred G. Gustavson, Keshav Pingali, Kamen Yotov:
Is Cache-Oblivious DGEMM Viable?
919-928
Electronic Edition (link) BibTeX
- Pascal Hénon, Pierre Ramet, Jean Roman:
Partitioning and Blocking Issues for a Parallel Incomplete Factorization.
929-937
Electronic Edition (link) BibTeX
- Takahiro Katagiri, Christof Vömel, James Demmel:
Automatic Performance Tuning for the Multi-section with Multiple Eigenvalues Method for Symmetric Tridiagonal Eigenproblems.
938-948
Electronic Edition (link) BibTeX
- Mariana Luderitz Kolberg, Lucas Baldo, Pedro Velho, Luiz Gustavo Fernandes, Dalcidio Moraes Claudio:
Optimizing a Parallel Self-verified Method for Solving Linear Systems.
949-955
Electronic Edition (link) BibTeX
- Claude Lacoursière:
A Parallel Block Iterative Method for Interactive Contacting Rigid Multibody Simulations on Multicore PCs.
956-965
Electronic Edition (link) BibTeX
- Marzio Sala, William F. Spotz, Michael A. Heroux:
PyTrilinos: High-Performance Distributed-Memory Solvers for Python.
966-975
Electronic Edition (link) BibTeX
- Marzio Sala, Kendall S. Stanley, Michael A. Heroux:
Amesos: A Set of General Interfaces to Sparse Direct Solver Libraries.
976-985
Electronic Edition (link) BibTeX
- Teruo Tanaka, Takahiro Katagiri, Toshitsugu Yuba:
d-Spline Based Incremental Parameter Estimation in Automatic Performance Tuning.
986-995
Electronic Edition (link) BibTeX
Simulation Environments
Algorithms and Applications for Blue Gene/L
Scientific Computing Applications
Scientific Computing Tools
Parallel Search Algorithms
Peer-to-Peer Computing
Mobility and Security
Algorithms for Single-Chip Multiprocessors
Copyright © Sat May 16 23:32:29 2009
by Michael Ley (ley@uni-trier.de)
