2008 | ||
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11 | EE | Obi L. Griffith, Stephen Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones: ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Research 36(Database-Issue): 107-113 (2008) |
2007 | ||
10 | EE | Shannan J. Ho Sui, Debra L. Fulton, David J. Arenillas, Andrew T. Kwon, Wyeth W. Wasserman: oPOSSUM: integrated tools for analysis of regulatory motif over-representation. Nucleic Acids Research 35(Web-Server-Issue): 245-252 (2007) |
2006 | ||
9 | EE | Shao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman: Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes. APBC 2006: 247-256 |
8 | EE | Raf M. Podowski, Brett Miller, Wyeth W. Wasserman: Visualization of complementary systems biology data with parallel heatmaps. IBM Journal of Research and Development 50(6): 575-582 (2006) |
7 | EE | Dominique Vlieghe, Albin Sandelin, Pieter J. De Bleser, Kris Vleminckx, Wyeth W. Wasserman, Frans van Roy, Boris Lenhard: A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Research 34(Database-Issue): 95-97 (2006) |
2005 | ||
6 | EE | Dimas Yusuf, Jonathan S. Lim, Wyeth W. Wasserman: The Gene Set Builder: collation, curation, and distribution of sets of genes. BMC Bioinformatics 6: 305 (2005) |
2004 | ||
5 | Albin Sandelin, Wynand Alkema, Pär G. Engström, Wyeth W. Wasserman, Boris Lenhard: JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Research 32(Database-Issue): 91-94 (2004) | |
4 | Wynand Alkema, Öjvind Johansson, Jens Lagergren, Wyeth W. Wasserman: MSCAN: identification of functional clusters of transcription factor binding sites. Nucleic Acids Research 32(Web-Server-Issue): 195-198 (2004) | |
3 | Albin Sandelin, Wyeth W. Wasserman, Boris Lenhard: ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Research 32(Web-Server-Issue): 249-252 (2004) | |
2003 | ||
2 | EE | Öjvind Johansson, Wynand Alkema, Wyeth W. Wasserman, Jens Lagergren: Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm. ISMB (Supplement of Bioinformatics) 2003: 169-176 |
2002 | ||
1 | Boris Lenhard, Wyeth W. Wasserman: TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18(8): 1135-1136 (2002) |