Christian J. Stoeckert Jr.

2008
23	EE	Bindu Gajria, Amit Bahl, John Brestelli, Jennifer Dommer, Steve Fischer, Xin Gao, Mark Heiges, John Iodice, Jessica C. Kissinger, Aaron J. Mackey, Deborah F. Pinney, David S. Roos, Christian J. Stoeckert Jr., Haiming Wang, Brian P. Brunk: ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Research 36(Database-Issue): 553-556 (2008)
2007
22	EE	Jonathan Schug, Max Mintz, Christian J. Stoeckert Jr.: Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL). DILS 2007: 188-203
21	EE	Cristina Aurrecoechea, Mark Heiges, Haiming Wang, Zhiming Wang, Steve Fischer, Philippa Rhodes, John A. Miller, Eileen Kraemer, Christian J. Stoeckert Jr., David S. Roos, Jessica C. Kissinger: ApiDB: integrated resources for the apicomplexan bioinformatics resource center. Nucleic Acids Research 35(Database-Issue): 427-430 (2007)
20	EE	Joan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.: EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes. Nucleic Acids Research 35(Database-Issue): 751-755 (2007)
2006
19	EE	Patricia L. Whetzel, Helen E. Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris J. Taylor, Joseph White, Christian J. Stoeckert Jr.: The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22(7): 866-873 (2006)
18	EE	Feng Chen, Aaron J. Mackey, Christian J. Stoeckert Jr., David S. Roos: OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Research 34(Database-Issue): 363-368 (2006)
2005
17	EE	Gregory R. Grant, Junmin Liu, Christian J. Stoeckert Jr.: A practical false discovery rate approach to identifying patterns of differential expression in microarray data. Bioinformatics 21(11): 2684-2690 (2005)
2004
16	EE	Andrew Jones, Ela Hunt, Jonathan M. Wastling, Angel Pizarro, Christian J. Stoeckert Jr.: An object model and database for functional genomics. Bioinformatics 20(10): 1583-1590 (2004)
15	EE	Elisabetta Manduchi, Gregory R. Grant, H. He, Junmin Liu, Matthew D. Mailman, A. D. Pizarro, Patricia L. Whetzel, Christian J. Stoeckert Jr.: RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies. Bioinformatics 20(4): (2004)
14		Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos: ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Research 32(Database-Issue): 326-328 (2004)
2003
13		Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel: PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Research 31(1): 212-215 (2003)
12	EE	Christian J. Stoeckert Jr.: Common Objects: Think Global, Act Local. OMICS 7(1): 103-104 (2003)
2002
11		Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
10	EE	Susan B. Davidson, Christian J. Stoeckert Jr.: In memory of Vadim Aleksandrovich Ratner. In Silico Biology 2: 47 (2002)
9		Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.: PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Research 30(1): 87-90 (2002)
2001
8		Christian J. Stoeckert Jr., Angel Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton: A relational schema for both array-based and SAGE gene expression experiments. Bioinformatics 17(4): 300-308 (2001)
7	EE	Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.: K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Systems Journal 40(2): 512-531 (2001)
2000
6		Elisabetta Manduchi, Gregory R. Grant, Steven E. McKenzie, G. Christian Overton, Saul Surrey, Christian J. Stoeckert Jr.: Generation of patterns from gene expression data by assigning confidence to differentially expressed genes. Bioinformatics 16(8): 685-698 (2000)
5	EE	Susan B. Davidson, Christian J. Stoeckert Jr.: In Memory of Chris Overton. In Silico Biology 1: 21 (2000)
1999
4		Christian J. Stoeckert Jr., Fidel Salas, Brian P. Brunk, G. Christian Overton: EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis. Nucleic Acids Research 27(1): 200-203 (1999)
1998
3		Fidel Salas, Juergen Haas, Brian P. Brunk, Christian J. Stoeckert Jr., G. Christian Overton: EpoDB: a database of genes expressed during vertebrate erythropoiesis. Nucleic Acids Research 26(1): 288-289 (1998)
1996
2		Fidel Salas, G. Christian Overton, Juergen Haas, Christian J. Stoeckert Jr.: EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base. German Conference on Bioinformatics 1996: 40-45
1		Fidel Salas, Juergen Haas, G. Christian Overton, Christian J. Stoeckert Jr.: EpoDB: An Erythropoiesis Gene Expression Database in Progress. German Conference on Bioinformatics - Selected Papers 1996: 52-61

Coauthor Index

1	Cristina Aurrecoechea	[21]
2	Amit Bahl	[9] [13] [23]
3	Catherine A. Ball	[11]
4	Alvis Brazma	[11]
5	John Brestelli	[20] [23]
6	Catherine Brooksbank	[11]
7	Brian P. Brunk	[3] [4] [7] [8] [9] [13] [23]
8	Helen C. Causton	[11] [19]
9	Duccio Cavalieri	[11]
10	Feng Chen	[18]
11	Ross L. Coppel	[9]
12	Jonathan Crabtree	[7] [8] [9] [13] [14]
13	Susan B. Davidson	[5] [7] [10]
14	Sharon J. Diskin	[9]
15	Jennifer Dommer	[23]
16	Liju Fan	[19]
17	Steve Fischer	[14] [21] [23]
18	Jennifer Fostel	[19]
19	Gilberto Fragoso	[19]
20	Martin J. Fraunholz	[9] [13]
21	Terry Gaasterland	[11]
22	Bindu Gajria	[13] [23]
23	Laurence Game	[19]
24	Xin Gao	[23]
25	M. Gibson	[8]
26	Hagai Ginsburg	[13]
27	Regina K. Gorski	[20]
28	Gregory R. Grant	[6] [9] [13] [15] [17]
29	Dinesh Gupta	[9] [13]
30	Juergen Haas	[1] [2] [3]
31	H. He	[15]
32	Mark Heiges	[21] [23]
33	Mervi Heiskanen	[19]
34	Pascal Hingamp	[11]
35	Frank Holstege	[11]
36	Robert L. Huestis	[9]
37	Ela Hunt	[16]
38	John Iodice	[23]
39	Andrew Jones	[16]
40	Klaus H. Kaestner	[20]
41	Jessica C. Kissinger	[9] [13] [21] [23]
42	Eileen Kraemer	[21]
43	Philip Labo	[9] [13]
44	Li Li	[9] [13] [14]
45	Junmin Liu	[15] [17] [20]
46	Aaron J. Mackey	[18] [23]
47	Matthew D. Mailman	[13] [15]
48	Elisabetta Manduchi	[6] [8] [15] [20]
49	Joan M. Mazzarelli	[20]
50	Steven E. McKenzie	[6]
51	Shannon K. McWeeney	[9]
52	Arthur J. Milgram	[9] [13]
53	John A. Miller	[21]
54	Max Mintz	[22]
55	Norman Morrison	[19]
56	G. Christian Overton	[1] [2] [3] [4] [6] [7] [8]
57	Helen E. Parkinson	[11] [19]
58	David S. Pearson	[13]
59	Deborah F. Pinney	[14] [20] [23]
60	A. D. Pizarro	[15]
61	Angel Pizarro	[8] [16]
62	John Quackenbush	[11]
63	Philippa Rhodes	[21]
64	Martin Ringwald	[11]
65	Philippe Rocca-Serra	[11] [19]
66	David S. Roos	[9] [13] [14] [18] [21] [23]
67	Fidel Salas	[1] [2] [3] [4]
68	Susanna-Assunta Sansone	[19]
69	Jonathan Schug	[7] [8] [9] [13] [20] [22]
70	Shai Shen-Orr	[8]
71	Gavin Sherlock	[11]
72	L. David Sibley	[14]
73	Paul T. Spellman	[11]
74	Jason E. Stewart	[11]
75	Saul Surrey	[6]
76	Val Tannen (Valeriu Breazu, Val Breazu-Tannen)	[7]
77	Ronald Taylor	[11]
78	Chris J. Taylor	[19]
79	Haiming Wang	[21] [23]
80	Zhiming Wang	[21]
81	Jonathan M. Wastling	[16]
82	Patricia L. Whetzel	[13] [15] [19]
83	Joseph White	[19]
84	Peter White	[20]