| 2008 |
|---|
| 17 | EE | Robert Pesch,
Artem Lysenko,
Matthew Hindle,
Keywan Hassani-Pak,
Ralf Thiele,
Christopher J. Rawlings,
Jacob Köhler,
Jan Taubert:
Graph-based sequence annotation using a data integration approach.
J. Integrative Bioinformatics 5(2): (2008) |
| 16 | EE | Rainer Winnenburg,
Martin Urban,
Andrew Beacham,
Thomas K. Baldwin,
Sabrina Holland,
Magdalen Lindeberg,
Hilde Hansen,
Christopher J. Rawlings,
Kim E. Hammond-Kosack,
Jacob Köhler:
PHI-base update: additions to the pathogen-host interaction database.
Nucleic Acids Research 36(Database-Issue): 572-576 (2008) |
| 2007 |
|---|
| 15 | EE | Jan Taubert,
Klaus Peter Sieren,
Matthew Hindle,
Berend Hoekman,
Rainer Winnenburg,
Stephan Philippi,
Christopher J. Rawlings,
Jacob Köhler:
The OXL format for the exchange of integrated datasets.
J. Integrative Bioinformatics 4(3): (2007) |
| 2006 |
|---|
| 14 | EE | Jacob Köhler,
Katherine Munn,
Alexander Rüegg,
Andre Skusa,
Barry Smith:
Quality control for terms and definitions in ontologies and taxonomies.
BMC Bioinformatics 7: 212 (2006) |
| 13 | EE | Jacob Köhler,
Jan Baumbach,
Jan Taubert,
Michael Specht,
Andre Skusa,
Alexander Rüegg,
Christopher J. Rawlings,
Paul Verrier,
Stephan Philippi:
Graph-based analysis and visualization of experimental results with ONDEX.
Bioinformatics 22(11): 1383-1390 (2006) |
| 12 | EE | Stephan Philippi,
Jacob Köhler:
Automated Structure Extraction and XML Conversion of Life Science Database Flat Files.
IEEE Transactions on Information Technology in Biomedicine 10(4): 714-721 (2006) |
| 11 | EE | Jacob Köhler,
Stephan Philippi,
Michael Specht,
Alexander Rüegg:
Ontology based text indexing and querying for the semantic web.
Knowl.-Based Syst. 19(8): 744-754 (2006) |
| 10 | EE | Rainer Winnenburg,
Thomas K. Baldwin,
Martin Urban,
Christopher J. Rawlings,
Jacob Köhler,
Kim E. Hammond-Kosack:
PHI-base: a new database for pathogen host interactions.
Nucleic Acids Research 34(Database-Issue): 459-464 (2006) |
| 2005 |
|---|
| 9 | | Andre Skusa,
Alexander Rüegg,
Jacob Köhler:
Extraction of biological interaction networks from scientific literature.
Briefings in Bioinformatics 6(3): 263-276 (2005) |
| 2004 |
|---|
| 8 | EE | Barry Smith,
Jacob Köhler,
Anand Kumar:
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology.
DILS 2004: 79-94 |
| 7 | | Stephan Philippi,
Jacob Köhler:
Using XML Technology for the Ontology-Based Semantic Integration of Life Science Databases.
IEEE Transactions on Information Technology in Biomedicine 8(2): 154-160 (2004) |
| 6 | EE | Jacob Köhler,
Christopher J. Rawlings,
Paul Verrier,
Rowan A. C. Mitchell,
Andre Skusa,
Alexander Rüegg,
Stephan Philippi:
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures.
In Silico Biology 5: (2004) |
| 2003 |
|---|
| 5 | | Jacob Köhler,
Stephan Philippi,
Matthias Lange:
SEMEDA: ontology based semantic integration of biological databases.
Bioinformatics 19(18): 2420-2427 (2003) |
| 2002 |
|---|
| 4 | | Ming Chen,
Andreas Freier,
Jacob Köhler,
Alexander Rüegg:
The biology Petri net markup language.
Promise 2002: 150-161 |
| 3 | EE | Jacob Köhler,
Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
In Silico Biology 2: 21 (2002) |
| 2001 |
|---|
| 2 | | Jacob Köhler,
Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
German Conference on Bioinformatics 2001: 47-52 |
| 2000 |
|---|
| 1 | | Jacob Köhler,
Matthias Lange,
Ralf Hofestädt,
Steffen Schulze-Kremer:
Logical and Semantic Database Integration.
BIBE 2000: 77-80 |
