2008 |
13 | EE | Sriram Sankararaman,
Kimmen Sjölander:
INTREPID - INformation-theoretic TREe traversal for Protein functional site IDentification.
Bioinformatics 24(21): 2445-2452 (2008) |
12 | EE | Samart Wanchana,
Supat Thongjuea,
Victor Jun M. Ulat,
Mylah Anacleto,
Ramil Mauleon,
Matthieu Conte,
Mathieu Rouard,
Manuel Ruiz,
Nandini Krishnamurthy,
Kimmen Sjölander,
Theo van Hintum,
Richard M. Bruskiewich:
The Generation Challenge Programme comparative plant stress-responsive gene catalogue.
Nucleic Acids Research 36(Database-Issue): 943-946 (2008) |
2007 |
11 | EE | Jake Gunn Glanville,
Dan Kirshner,
Nandini Krishnamurthy,
Kimmen Sjölander:
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.
Nucleic Acids Research 35(Web-Server-Issue): 27-32 (2007) |
2005 |
10 | EE | Duncan Brown,
Nandini Krishnamurthy,
Joseph M. Dale,
Wayne Christopher,
Kimmen Sjölander:
Subfamily HMMS in Functional Genomics.
Pacific Symposium on Biocomputing 2005 |
2004 |
9 | EE | Kimmen Sjölander:
Phylogenomic inference of protein molecular function: advances and challenges.
Bioinformatics 20(2): 170-179 (2004) |
8 | EE | Robert C. Edgar,
Kimmen Sjölander:
A comparison of scoring functions for protein sequence profile alignment.
Bioinformatics 20(8): 1301-1308 (2004) |
7 | EE | Robert C. Edgar,
Kimmen Sjölander:
COACH: profile-profile alignment of protein families using hidden Markov models.
Bioinformatics 20(8): 1309-1318 (2004) |
2003 |
6 | EE | Robert C. Edgar,
Kimmen Sjölander:
Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models.
Pacific Symposium on Biocomputing 2003: 180-191 |
5 | | Robert C. Edgar,
Kimmen Sjölander:
SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models.
Bioinformatics 19(11): 1404-1411 (2003) |
1998 |
4 | | Kimmen Sjölander:
Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains.
ISMB 1998: 165-174 |
1996 |
3 | | Kimmen Sjölander,
Kevin Karplus,
Michael Brown,
Richard Hughey,
Anders Krogh,
I. Saira Mian,
David Haussler:
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.
Computer Applications in the Biosciences 12(4): 327-345 (1996) |
1994 |
2 | | Yasubumi Sakakibara,
Michael Brown,
Richard Hughey,
I. Saira Mian,
Kimmen Sjölander,
Rebecca C. Underwood,
David Haussler:
Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars.
CPM 1994: 289-306 |
1993 |
1 | | Michael Brown,
Richard Hughey,
Anders Krogh,
I. Saira Mian,
Kimmen Sjölander,
David Haussler:
Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families.
ISMB 1993: 47-55 |