2008 | ||
---|---|---|
39 | EE | Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh: Modeling promoter grammars with evolving hidden Markov models. Bioinformatics 24(15): 1669-1675 (2008) |
38 | EE | Man-Hung Eric Tang, Anders Krogh, Ole Winther: BayesMD: Flexible Biological Modeling for Motif Discovery. Journal of Computational Biology 15(10): 1347-1363 (2008) |
37 | EE | Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin: JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research 36(Database-Issue): 102-106 (2008) |
2007 | ||
36 | EE | Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302 |
35 | EE | Stinus Lindgreen, Paul P. Gardner, Anders Krogh: MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinformatics 23(24): 3304-3311 (2007) |
34 | EE | Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research 35(Web-Server-Issue): 429-432 (2007) |
2006 | ||
33 | EE | Kasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh: A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinformatics 7: 239 (2006) |
32 | EE | Stinus Lindgreen, Paul P. Gardner, Anders Krogh: Measuring covariation in RNA alignments: physical realism improves information measures. Bioinformatics 22(24): 2988-2995 (2006) |
31 | EE | Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: Evolving the structure of hidden Markov models. IEEE Trans. Evolutionary Computation 10(1): 39-49 (2006) |
30 | EE | Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006) |
2005 | ||
29 | EE | Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh: Evolving hidden Markov models for protein secondary structure prediction. Congress on Evolutionary Computation 2005: 33-40 |
28 | EE | Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257 |
27 | EE | Pernille Nielsen, Anders Krogh: Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinformatics 21(24): 4322-4329 (2005) |
2004 | ||
26 | EE | Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: The Block Hidden Markov Model for Biological Sequence Analysis. KES 2004: 64-70 |
25 | EE | Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: Training HMM structure with genetic algorithm for biological sequence analysis. Bioinformatics 20(18): 3613-3619 (2004) |
2003 | ||
24 | EE | Thomas Schou Larsen, Anders Krogh: EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 4: 21 (2003) |
2002 | ||
23 | Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53 | |
22 | EE | David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh: Bias of Purine Stretches in Sequenced Chromosomes. Computers & Chemistry 26(5): 531-541 (2002) |
2001 | ||
21 | Søren Brunak, Anders Krogh: ISMB 2001. ISMB (Supplement of Bioinformatics) 2001: 1-4 | |
1999 | ||
20 | Anders Krogh, Soren Kamaric Riis: Hidden Neural Networks. Neural Computation 11(2): 541-563 (1999) | |
1998 | ||
19 | Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge University Press 1998 | |
18 | Henrik Nielsen, Anders Krogh: Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. ISMB 1998: 122-130 | |
17 | Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh: A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182 | |
1997 | ||
16 | Anders Krogh: Two Methods for Improving Performance of a HMM and their Application for Gene Finding. ISMB 1997: 179-186 | |
1996 | ||
15 | Richard Hughey, Anders Krogh: Hidden Markov models for sequence analysis: extension and analysis of the basic method. Computer Applications in the Biosciences 12(2): 95-107 (1996) | |
14 | Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler: Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Computer Applications in the Biosciences 12(4): 327-345 (1996) | |
13 | Soren Kamaric Riis, Anders Krogh: Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. Journal of Computational Biology 3(1): 163-184 (1996) | |
1995 | ||
12 | Anders Krogh, Graeme J. Mitchison: Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. ISMB 1995: 215-221 | |
11 | Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Periodic Sequence Patterns in Human Exons. ISMB 1995: 30-38 | |
10 | EE | Peter Sollich, Anders Krogh: Learning with ensembles: How overfitting can be useful. NIPS 1995: 190-196 |
9 | EE | Anders Krogh, Soren Kamaric Riis: Prediction of Beta Sheets in Proteins. NIPS 1995: 917-923 |
1994 | ||
8 | EE | Anders Krogh, Jesper Vedelsby: Neural Network Ensembles, Cross Validation, and Active Learning. NIPS 1994: 231-238 |
7 | Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth: Bounds on approximate steepest descent for likelihood maximization in exponential families. IEEE Transactions on Information Theory 40(4): 1215- (1994) | |
1993 | ||
6 | Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler: Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB 1993: 47-55 | |
5 | EE | Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Hidden Markov Models for Human Genes. NIPS 1993: 761-768 |
4 | EE | Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther: A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. 4(2): 159-169 (1993) |
1991 | ||
3 | EE | Anders Krogh, John A. Hertz: A Simple Weight Decay Can Improve Generalization. NIPS 1991: 950-957 |
1990 | ||
2 | EE | Anders Krogh, John A. Hertz: Dynamics of Generalization in Linear Perceptrons. NIPS 1990: 897-903 |
1989 | ||
1 | EE | Anders Krogh, C. I. Thorbergsson, John A. Hertz: A Cost Function for Internal Representations. NIPS 1989: 733-740 |