Anders Krogh

2008
39	EE	Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh: Modeling promoter grammars with evolving hidden Markov models. Bioinformatics 24(15): 1669-1675 (2008)
38	EE	Man-Hung Eric Tang, Anders Krogh, Ole Winther: BayesMD: Flexible Biological Modeling for Motif Discovery. Journal of Computational Biology 15(10): 1347-1363 (2008)
37	EE	Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin: JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research 36(Database-Issue): 102-106 (2008)
2007
36	EE	Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302
35	EE	Stinus Lindgreen, Paul P. Gardner, Anders Krogh: MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinformatics 23(24): 3304-3311 (2007)
34	EE	Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research 35(Web-Server-Issue): 429-432 (2007)
2006
33	EE	Kasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh: A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinformatics 7: 239 (2006)
32	EE	Stinus Lindgreen, Paul P. Gardner, Anders Krogh: Measuring covariation in RNA alignments: physical realism improves information measures. Bioinformatics 22(24): 2988-2995 (2006)
31	EE	Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: Evolving the structure of hidden Markov models. IEEE Trans. Evolutionary Computation 10(1): 39-49 (2006)
30	EE	Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006)
2005
29	EE	Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh: Evolving hidden Markov models for protein secondary structure prediction. Congress on Evolutionary Computation 2005: 33-40
28	EE	Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer: An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257
27	EE	Pernille Nielsen, Anders Krogh: Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinformatics 21(24): 4322-4329 (2005)
2004
26	EE	Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: The Block Hidden Markov Model for Biological Sequence Analysis. KES 2004: 64-70
25	EE	Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: Training HMM structure with genetic algorithm for biological sequence analysis. Bioinformatics 20(18): 3613-3619 (2004)
2003
24	EE	Thomas Schou Larsen, Anders Krogh: EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 4: 21 (2003)
2002
23		Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53
22	EE	David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh: Bias of Purine Stretches in Sequenced Chromosomes. Computers & Chemistry 26(5): 531-541 (2002)
2001
21		Søren Brunak, Anders Krogh: ISMB 2001. ISMB (Supplement of Bioinformatics) 2001: 1-4
1999
20		Anders Krogh, Soren Kamaric Riis: Hidden Neural Networks. Neural Computation 11(2): 541-563 (1999)
1998
19		Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge University Press 1998
18		Henrik Nielsen, Anders Krogh: Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. ISMB 1998: 122-130
17		Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh: A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182
1997
16		Anders Krogh: Two Methods for Improving Performance of a HMM and their Application for Gene Finding. ISMB 1997: 179-186
1996
15		Richard Hughey, Anders Krogh: Hidden Markov models for sequence analysis: extension and analysis of the basic method. Computer Applications in the Biosciences 12(2): 95-107 (1996)
14		Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler: Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Computer Applications in the Biosciences 12(4): 327-345 (1996)
13		Soren Kamaric Riis, Anders Krogh: Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. Journal of Computational Biology 3(1): 163-184 (1996)
1995
12		Anders Krogh, Graeme J. Mitchison: Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. ISMB 1995: 215-221
11		Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Periodic Sequence Patterns in Human Exons. ISMB 1995: 30-38
10	EE	Peter Sollich, Anders Krogh: Learning with ensembles: How overfitting can be useful. NIPS 1995: 190-196
9	EE	Anders Krogh, Soren Kamaric Riis: Prediction of Beta Sheets in Proteins. NIPS 1995: 917-923
1994
8	EE	Anders Krogh, Jesper Vedelsby: Neural Network Ensembles, Cross Validation, and Active Learning. NIPS 1994: 231-238
7		Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth: Bounds on approximate steepest descent for likelihood maximization in exponential families. IEEE Transactions on Information Theory 40(4): 1215- (1994)
1993
6		Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler: Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB 1993: 47-55
5	EE	Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Hidden Markov Models for Human Genes. NIPS 1993: 761-768
4	EE	Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther: A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. 4(2): 159-169 (1993)
1991
3	EE	Anders Krogh, John A. Hertz: A Simple Weight Decay Can Improve Generalization. NIPS 1991: 950-957
1990
2	EE	Anders Krogh, John A. Hertz: Dynamics of Generalization in Linear Perceptrons. NIPS 1990: 897-903
1989
1	EE	Anders Krogh, C. I. Thorbergsson, John A. Hertz: A Cost Function for Internal Representations. NIPS 1989: 733-740

Coauthor Index

1	Mauro Amico	[30]
2	Peter Arctander	[33]
3	Pierre Baldi	[5] [11]
4	Michael Brown	[6] [14]
5	Søren Brunak	[5] [11] [21] [22]
6	Jan Christian Bryne	[37]
7	Rita Casadio	[23] [30] [36]
8	Nicolò Cesa-Bianchi	[7]
9	Yves Chauvin	[5] [11]
10	Richard Durbin	[19]
11	Sean R. Eddy	[19]
12	Arne Elofsson	[30]
13	Jacob Engelbrecht	[5] [11]
14	Piero Fariselli	[23] [30] [36]
15	Michele Finelli	[30]
16	Paul P. Gardner	[32] [33] [35]
17	Jan Gorodkin	[4]
18	Thomas Hamelryck	[29]
19	Lars Kai Hansen	[4]
20	David Haussler	[6] [14]
21	Gunnar von Heijne	[17] [30]
22	John A. Hertz	[1] [2] [3]
23	Richard Hughey	[6] [14] [15]
24	David Jones	[30]
25	Lukas Käll	[28] [34]
26	Kevin Karplus	[14]
27	Thomas Schou Larsen	[24]
28	Boris Lenhard	[37]
29	Stinus Lindgreen	[32] [35]
30	Troels Torben Marstrand	[37] [39]
31	Pier Luigi Martelli	[23] [30]
32	I. Saira Mian	[6] [14]
33	Graeme J. Mitchison	[12] [19]
34	Daniele Molinini	[36]
35	Kasper Munch	[33]
36	Henrik Nielsen	[18]
37	Pernille Nielsen	[27]
38	Isabelle da Piedade	[37]
39	Adam Prügel-Bennett	[25] [26] [29] [31]
40	Soren Kamaric Riis	[9] [13] [20]
41	Ivan Rossi	[30]
42	Albin Sandelin	[37] [39]
43	Kimmen Sjölander	[6] [14]
44	Peter Sollich	[10]
45	Erik L. L. Sonnhammer	[17] [28] [34]
46	Dikeos Mario Soumpasis	[22]
47	Hans Henrik Stærfeldt	[22]
48	Claus Svarer	[4]
49	Man-Hung Eric Tang	[37] [38]
50	C. I. Thorbergsson	[1]
51	David Ussery	[22]
52	Eivind Valen	[37]
53	Jesper Vedelsby	[8]
54	Håkan Viklund	[30]
55	Manfred K. Warmuth	[7]
56	Ole Winther	[4] [37] [38]
57	Kyoung-Jae Won	[25] [26] [29] [31] [39]
58	Peder Worning	[22]
59	Andrea Zauli	[30]

Colors in the list of coauthors