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Anders Krogh

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2008
39EEKyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh: Modeling promoter grammars with evolving hidden Markov models. Bioinformatics 24(15): 1669-1675 (2008)
38EEMan-Hung Eric Tang, Anders Krogh, Ole Winther: BayesMD: Flexible Biological Modeling for Motif Discovery. Journal of Computational Biology 15(10): 1347-1363 (2008)
37EEJan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin: JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research 36(Database-Issue): 102-106 (2008)
2007
36EEPiero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302
35EEStinus Lindgreen, Paul P. Gardner, Anders Krogh: MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinformatics 23(24): 3304-3311 (2007)
34EELukas Käll, Anders Krogh, Erik L. L. Sonnhammer: Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research 35(Web-Server-Issue): 429-432 (2007)
2006
33EEKasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh: A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinformatics 7: 239 (2006)
32EEStinus Lindgreen, Paul P. Gardner, Anders Krogh: Measuring covariation in RNA alignments: physical realism improves information measures. Bioinformatics 22(24): 2988-2995 (2006)
31EEKyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: Evolving the structure of hidden Markov models. IEEE Trans. Evolutionary Computation 10(1): 39-49 (2006)
30EEMauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006)
2005
29EEKyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh: Evolving hidden Markov models for protein secondary structure prediction. Congress on Evolutionary Computation 2005: 33-40
28EELukas Käll, Anders Krogh, Erik L. L. Sonnhammer: An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257
27EEPernille Nielsen, Anders Krogh: Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinformatics 21(24): 4322-4329 (2005)
2004
26EEKyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: The Block Hidden Markov Model for Biological Sequence Analysis. KES 2004: 64-70
25EEKyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh: Training HMM structure with genetic algorithm for biological sequence analysis. Bioinformatics 20(18): 3613-3619 (2004)
2003
24EEThomas Schou Larsen, Anders Krogh: EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 4: 21 (2003)
2002
23 Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53
22EEDavid Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh: Bias of Purine Stretches in Sequenced Chromosomes. Computers & Chemistry 26(5): 531-541 (2002)
2001
21 Søren Brunak, Anders Krogh: ISMB 2001. ISMB (Supplement of Bioinformatics) 2001: 1-4
1999
20 Anders Krogh, Soren Kamaric Riis: Hidden Neural Networks. Neural Computation 11(2): 541-563 (1999)
1998
19 Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge University Press 1998
18 Henrik Nielsen, Anders Krogh: Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. ISMB 1998: 122-130
17 Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh: A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182
1997
16 Anders Krogh: Two Methods for Improving Performance of a HMM and their Application for Gene Finding. ISMB 1997: 179-186
1996
15 Richard Hughey, Anders Krogh: Hidden Markov models for sequence analysis: extension and analysis of the basic method. Computer Applications in the Biosciences 12(2): 95-107 (1996)
14 Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler: Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Computer Applications in the Biosciences 12(4): 327-345 (1996)
13 Soren Kamaric Riis, Anders Krogh: Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. Journal of Computational Biology 3(1): 163-184 (1996)
1995
12 Anders Krogh, Graeme J. Mitchison: Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. ISMB 1995: 215-221
11 Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Periodic Sequence Patterns in Human Exons. ISMB 1995: 30-38
10EEPeter Sollich, Anders Krogh: Learning with ensembles: How overfitting can be useful. NIPS 1995: 190-196
9EEAnders Krogh, Soren Kamaric Riis: Prediction of Beta Sheets in Proteins. NIPS 1995: 917-923
1994
8EEAnders Krogh, Jesper Vedelsby: Neural Network Ensembles, Cross Validation, and Active Learning. NIPS 1994: 231-238
7 Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth: Bounds on approximate steepest descent for likelihood maximization in exponential families. IEEE Transactions on Information Theory 40(4): 1215- (1994)
1993
6 Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler: Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB 1993: 47-55
5EEPierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Hidden Markov Models for Human Genes. NIPS 1993: 761-768
4EEJan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther: A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. 4(2): 159-169 (1993)
1991
3EEAnders Krogh, John A. Hertz: A Simple Weight Decay Can Improve Generalization. NIPS 1991: 950-957
1990
2EEAnders Krogh, John A. Hertz: Dynamics of Generalization in Linear Perceptrons. NIPS 1990: 897-903
1989
1EEAnders Krogh, C. I. Thorbergsson, John A. Hertz: A Cost Function for Internal Representations. NIPS 1989: 733-740

Coauthor Index

1Mauro Amico [30]
2Peter Arctander [33]
3Pierre Baldi [5] [11]
4Michael Brown [6] [14]
5Søren Brunak [5] [11] [21] [22]
6Jan Christian Bryne [37]
7Rita Casadio [23] [30] [36]
8Nicolò Cesa-Bianchi [7]
9Yves Chauvin [5] [11]
10Richard Durbin [19]
11Sean R. Eddy [19]
12Arne Elofsson [30]
13Jacob Engelbrecht [5] [11]
14Piero Fariselli [23] [30] [36]
15Michele Finelli [30]
16Paul P. Gardner [32] [33] [35]
17Jan Gorodkin [4]
18Thomas Hamelryck [29]
19Lars Kai Hansen [4]
20David Haussler [6] [14]
21Gunnar von Heijne [17] [30]
22John A. Hertz [1] [2] [3]
23Richard Hughey [6] [14] [15]
24David Jones [30]
25Lukas Käll [28] [34]
26Kevin Karplus [14]
27Thomas Schou Larsen [24]
28Boris Lenhard [37]
29Stinus Lindgreen [32] [35]
30Troels Torben Marstrand [37] [39]
31Pier Luigi Martelli [23] [30]
32I. Saira Mian [6] [14]
33Graeme J. Mitchison [12] [19]
34Daniele Molinini [36]
35Kasper Munch [33]
36Henrik Nielsen [18]
37Pernille Nielsen [27]
38Isabelle da Piedade [37]
39Adam Prügel-Bennett [25] [26] [29] [31]
40Soren Kamaric Riis [9] [13] [20]
41Ivan Rossi [30]
42Albin Sandelin [37] [39]
43Kimmen Sjölander [6] [14]
44Peter Sollich [10]
45Erik L. L. Sonnhammer [17] [28] [34]
46Dikeos Mario Soumpasis [22]
47Hans Henrik Stærfeldt [22]
48Claus Svarer [4]
49Man-Hung Eric Tang [37] [38]
50C. I. Thorbergsson [1]
51David Ussery [22]
52Eivind Valen [37]
53Jesper Vedelsby [8]
54Håkan Viklund [30]
55Manfred K. Warmuth [7]
56Ole Winther [4] [37] [38]
57Kyoung-Jae Won [25] [26] [29] [31] [39]
58Peder Worning [22]
59Andrea Zauli [30]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)