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John Quackenbush

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2008
15EEMichael Ochs, John Quackenbush, Ramana Davuluri: Session Introduction. Pacific Symposium on Biocomputing 2008: 137-140
2007
14EEJohn Quackenbush: Stochasticity and Networks in Genomic Data. BIBE 2007: 2
13EEJun S. Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X. Shirley Liu: Microarray blob-defect removal improves array analysis. Bioinformatics 23(8): 966-971 (2007)
2006
12EEJohn Quackenbush, Steven Salzberg: It is time to end the patenting of software. Bioinformatics 22(12): 1416-1417 (2006)
11EEAgnes P. Chan, Geo Pertea, Foo Cheung, Dan Lee, Li Zheng, Cathy Whitelaw, Ana C. Pontaroli, Phillip SanMiguel, Yinan Yuan, Jeffrey Bennetzen, William Brad Barbazuk, John Quackenbush, Pablo D. Rabinowicz: The TIGR Maize Database. Nucleic Acids Research 34(Database-Issue): 771-776 (2006)
2005
10EEAdam A. Margolin, Joel Greshock, Tara L. Naylor, Yael Mosse, John M. Maris, Graham Bignell, Alexander I. Saeed, John Quackenbush, Barbara L. Weber: CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data. Bioinformatics 21(15): 3308-3311 (2005)
9EEAmira Djebbari, Svetlana Karamycheva, Eleanor Howe, John Quackenbush: MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms. Bioinformatics 21(15): 3324-3326 (2005)
8EEYuandan Lee, Jennifer Tsai, S. Sunkara, Svetlana Karamycheva, Geo Pertea, Razvan Sultana, Valentin Antonescu, Agnes P. Chan, Foo Cheung, John Quackenbush: The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucleic Acids Research 33(Database-Issue): 71-74 (2005)
2003
7EERichard Tong, John Quackenbush, Mark Snuffin: Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track. TREC 2003: 547-551
6 Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush: TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5): 651-652 (2003)
5 Qiaoping Yuan, Shu Ouyang, Jia Liu, Bernard B. Suh, Foo Cheung, Razvan Sultana, Daniel Lee, John Quackenbush, C. Robin Buell: The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Research 31(1): 229-233 (2003)
2002
4 Alexander Sturn, John Quackenbush, Zlatko Trajanoski: Genesis: cluster analysis of microarray data. Bioinformatics 18(1): 207-208 (2002)
3 Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
2001
2 John Quackenbush, Jennifer Cho, Daniel Lee, Feng Liang, Ingeborg Holt, Svetlana Karamycheva, Babak Parvizi, Geo Pertea, Razvan Sultana, Joseph White: The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Research 29(1): 159-164 (2001)
2000
1 John Quackenbush, Feng Liang, Ingeborg Holt, Geo Pertea, Jonathan Upton: The TIGR Gene Indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research 28(1): 141-145 (2000)

Coauthor Index

1Valentin Antonescu [6] [8]
2Catherine A. Ball [3]
3William Brad Barbazuk [11]
4Jeffrey Bennetzen [11]
5Graham Bignell [10]
6Alvis Brazma [3]
7Catherine Brooksbank [3]
8C. Robin Buell [5]
9Helen C. Causton [3]
10Duccio Cavalieri [3]
11Agnes P. Chan [8] [11]
12Foo Cheung [5] [6] [8] [11]
13Jennifer Cho [2]
14Ramana Davuluri [15]
15Amira Djebbari [9]
16Edward Fox [13]
17Terry Gaasterland [3]
18Joel Greshock [10]
19Pascal Hingamp [3]
20Frank Holstege [3]
21Ingeborg Holt [1] [2]
22Eleanor Howe [9]
23Xiaoqiu Huang [6]
24Svetlana Karamycheva [2] [6] [8] [9]
25Dan Lee [11]
26Daniel Lee [2] [5]
27Yuandan Lee [6] [8]
28Wei Li [13]
29Feng Liang [1] [2] [6]
30Jia Liu [5]
31X. Shirley Liu [13]
32Kaveh Maghsoudi [13]
33Adam A. Margolin [10]
34John M. Maris [10]
35Yael Mosse [10]
36Tara L. Naylor [10]
37Michael Ochs [15]
38Shu Ouyang [5]
39Helen E. Parkinson [3]
40Babak Parvizi [2] [6]
41Geo Pertea [1] [2] [6] [8] [11]
42Ana C. Pontaroli [11]
43Pablo D. Rabinowicz [11]
44Martin Ringwald [3]
45Philippe Rocca-Serra [3]
46Alexander I. Saeed [10]
47Steven Salzberg [12]
48Phillip SanMiguel [11]
49Gavin Sherlock [3]
50Mark Snuffin [7]
51Jun S. Song [13]
52Paul T. Spellman [3]
53Jason E. Stewart [3]
54Christian J. Stoeckert Jr. [3]
55Alexander Sturn [4]
56Bernard B. Suh [5]
57Razvan Sultana [2] [5] [6] [8]
58S. Sunkara [8]
59Ronald Taylor [3]
60Richard Tong [7]
61Zlatko Trajanoski [4]
62Jennifer Tsai [6] [8]
63Jonathan Upton [1]
64Barbara L. Weber [10]
65Joseph White [2] [6]
66Cathy Whitelaw [11]
67Qiaoping Yuan [5]
68Yinan Yuan [11]
69Li Zheng [11]

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Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)