2009 |
13 | EE | Tomoya Ishimori,
Hideki Yamada,
Yuichiro Shibata,
Yasunori Osana,
Masato Yoshimi,
Yuri Nishikawa,
Hideharu Amano,
Akira Funahashi,
Noriko Hiroi,
Kiyoshi Oguri:
Pipeline Scheduling with Input Port Constraints for an FPGA-Based Biochemical Simulator.
ARC 2009: 368-373 |
2008 |
12 | EE | Masato Yoshimi,
Yuri Nishikawa,
Yasunori Osana,
Akira Funahashi,
Yuichiro Shibata,
Hideki Yamada,
Noriko Hiroi,
Hiroaki Kitano,
Hideharu Amano:
Practical implementation of a network-based stochastic biochemical simulation system on an FPGA.
FPL 2008: 663-666 |
2007 |
11 | EE | Masato Yoshimi,
Yow Iwaoka,
Yuri Nishikawa,
Toshinori Kojima,
Yasunori Osana,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hideki Yamada,
Hiroaki Kitano,
Hideharu Amano:
FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method.
FPL 2007: 254-259 |
10 | EE | Hideki Yamada,
Naoki Iwanaga,
Yuichiro Shibata,
Yasunori Osana,
Masato Yoshimi,
Yow Iwaoka,
Yuri Nishikawa,
Toshinori Kojima,
Hideharu Amano,
Akira Funahashi,
Noriko Hiroi,
Hiroaki Kitano,
Kiyoshi Oguri:
A Combining technique of rate law functions for a cost-effective reconfigurable biological simulator.
FPL 2007: 808-811 |
9 | EE | Yuri Nishikawa,
Michihiro Koibuchi,
Masato Yoshimi,
Kenichi Miura,
Hideharu Amano:
Performance Improvement Methodology for ClearSpeed's CSX600.
ICPP 2007: 77 |
2006 |
8 | | Daihan Wang,
Hiroki Matsutani,
Masato Yoshimi,
Michihiro Koibuchi,
Hideharu Amano:
A Parametric Study of Scalable Interconnects on FPGAs.
ERSA 2006: 130-135 |
7 | EE | Masato Yoshimi,
Yasunori Osana,
Yow Iwaoka,
Yuri Nishikawa,
Toshinori Kojima,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
An FPGA Implementation of High Throughput Stochastic Simulator for Large-Scale Biochemical Systems.
FPL 2006: 1-6 |
6 | EE | Yasunori Osana,
Masato Yoshimi,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
Performance Evaluation of an Fpga-Based Biochemical Simulator ReCSip.
FPL 2006: 1-6 |
2005 |
5 | | Yasunori Osana,
Yow Iwaoka,
Tomonori Fukushima,
Masato Yoshimi,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
A Framework for ODE-Based Multimodel Biochemical Simulations on an FPGA.
FPL 2005: 574-577 |
4 | | Naoki Iwanaga,
Yuichiro Shibata,
Masato Yoshimi,
Yasunori Osana,
Yow Iwaoka,
Tomonori Fukushima,
Hideharu Amano,
Akira Funahashi,
Noriko Hiroi,
Hiroaki Kitano,
Kiyoshi Oguri:
Efficient Scheduling of Rate Law Functions for ODE-Based Multimodel Biochemical Simulation on an FPGA.
FPL 2005: 666-669 |
3 | | Masato Yoshimi,
Yasunori Osana,
Yow Iwaoka,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
The Design of Scalable Stochastic Biochemical Simulator on FPGA.
FPT 2005: 339-340 |
2 | EE | Yasunori Osana,
Tomonori Fukushima,
Masato Yoshimi,
Yow Iwaoka,
Yuichiro Shibata,
Hiroaki Kitano,
Akira Funahashi,
Noriko Hiroi,
Hideharu Amano:
An FPGA-Based, Multi-model Simulation Method for Biochemical Systems.
IPDPS 2005 |
2004 |
1 | EE | Masato Yoshimi,
Yasunori Osana,
Tomonori Fukushima,
Hideharu Amano:
Stochastic Simulation for Biochemical Reactions on FPGA.
FPL 2004: 105-114 |