4. ISBRA 2008:
Atlanta,
GA,
USA
Ion I. Mandoiu, Raj Sunderraman, Alexander Zelikovsky (Eds.):
Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings.
Lecture Notes in Computer Science 4983 Springer 2008, ISBN 978-3-540-79449-3 BibTeX
- Dan L. Nicolae, Omar De la Cruz, William Wen, Baoguan Ke, Minsun Song:
Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data.
1
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- Mariana Kant, Maurice LeBon, David Sankoff:
Hierarchical Clustering Using Constraints.
2-13
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- Mukul S. Bansal, Oliver Eulenstein:
The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches.
14-25
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- Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim:
A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes.
26-37
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- Tingting Zhou, Keith C. C. Chan, Yi Pan, Zhenghua Wang:
An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis.
38-49
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- Ankit Agrawal, Volker Brendel, Xiaoqiu Huang:
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences.
50-61
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- Ankit Agrawal, Arka P. Ghosh, Xiaoqiu Huang:
Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition.
62-73
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- Todd J. Treangen, Aaron E. Darling, Mark A. Ragan, Xavier Messeguer:
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats.
74-86
Electronic Edition (link) BibTeX
- David Hoksza:
Improved Alignment of Protein Sequences Based on Common Parts.
87-99
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- Nikita Arnold, Tema Fridman, Robert M. Day, Andrey Gorin:
Invited Keynote Talk: Computing P-Values for Peptide Identifications in Mass Spectrometry.
100-109
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- Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu:
PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes.
110-121
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- Leonid Zaslavsky, Tatiana A. Tatusova:
Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure.
122-133
Electronic Edition (link) BibTeX
- Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff:
Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution.
134-145
Electronic Edition (link) BibTeX
- David Campo, Zoya Dimitrova, Yuri Khudyakov:
Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure.
146-158
Electronic Edition (link) BibTeX
- Kelly Westbrooks, Irina Astrovskaya, David Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky:
HCV Quasispecies Assembly Using Network Flows.
159-170
Electronic Edition (link) BibTeX
- Matthew A. Goto, Eric J. Schwabe:
A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring.
171-182
Electronic Edition (link) BibTeX
- Andrew S. Allen:
Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies.
183
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- Eyad Almasri, Peter Larsen, Guanrao Chen, Yang Dai:
Incorporating Literature Knowledge in Bayesian Network for Inferring Gene Networks with Gene Expression Data.
184-195
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- Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wang, Robert Clarke, Eric P. Hoffman:
Integrative Network Component Analysis for Regulatory Network Reconstruction.
196-207
Electronic Edition (link) BibTeX
- Min Li, Jianxin Wang, Jianer Chen:
A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks.
208-219
Electronic Edition (link) BibTeX
- Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas:
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.
220-231
Electronic Edition (link) BibTeX
- Stefan Gremalschi, Gulsah Altun:
Mean Squared Residue Based Biclustering Algorithms.
232-243
Electronic Edition (link) BibTeX
- Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Yue Wang, Eric P. Hoffman, Robert Clarke:
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
244-255
Electronic Edition (link) BibTeX
- Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution.
256-267
Electronic Edition (link) BibTeX
- Yongjin Park, Stanley Shackney, Russell Schwartz:
Network-Based Inference of Cancer Progression from Microarray Data.
268-279
Electronic Edition (link) BibTeX
- Kenneth H. Buetow:
Invited Keynote Talk: Quiet Revolution: Connectivity in the Cancer Research Community.
280
Electronic Edition (link) BibTeX
- Gordana Derado, Kichun Lee, Orietta Nicolis, F. DuBois Bowman, Mary Newell, Fabrizio F. Rugger, Brani Vidakovic:
Wavelet-Based 3-D Multifractal Spectrum with Applications in Breast MRI Images.
281-292
Electronic Edition (link) BibTeX
- Qingguo Zeng, Yunmei Chen:
Accurate Inverse Consistent Non-rigid Image Registration and Its Application on Automatic Re-contouring.
293-304
Electronic Edition (link) BibTeX
- Matthew Eavenson, Maciej Janik, Shravya Nimmagadda, John A. Miller, Krys Kochut, William S. York:
GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies.
305-316
Electronic Edition (link) BibTeX
- Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov:
Pattern Matching in RNA Structures.
317-330
Electronic Edition (link) BibTeX
- Wei-Mou Zheng:
The Use of a Conformational Alphabet for Fast Alignment of Protein Structures.
331-342
Electronic Edition (link) BibTeX
- Andrew Leaver-Fay, Jack Snoeyink, Brian Kuhlman:
On-the-Fly Rotamer Pair Energy Evaluation in Protein Design.
343-354
Electronic Edition (link) BibTeX
- James Lara, Zoya Dimitrova, Yuri Khudyakov:
Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling.
355-366
Electronic Edition (link) BibTeX
- Shibin Qiu, Terran Lane:
Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction.
367-378
Electronic Edition (link) BibTeX
- Wei Zhong, Rick Chow, Richard Stolz, Jieyue He, Marsha Dowell:
Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients.
379-389
Electronic Edition (link) BibTeX
- Majid Masso, Kahkeshan Hijazi, Nida Parvez, Iosif I. Vaisman:
Computational Mutagenesis of E. coliLacRepressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity.
390-401
Electronic Edition (link) BibTeX
- Rafael Ördög, Vince Grolmusz:
Evaluating Genetic Algorithms in Protein-Ligand Docking.
402-413
Electronic Edition (link) BibTeX
- Huimin Geng, Hesham H. Ali, Wing C. Chan:
A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling.
414-425
Electronic Edition (link) BibTeX
- Qihua Tan, Mads Thomassen, Kirsten M. Jochumsen, Jing Hua Zhao, Kaare Christensen, Torben A. Kruse:
Evolutionary Algorithm for Feature Subset Selection in Predicting Tumor Outcomes Using Microarray Data.
426-433
Electronic Edition (link) BibTeX
- Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai:
Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data.
434-443
Electronic Edition (link) BibTeX
- Shin-Lian Lo, Kwok-Leung Tsui, Benjamin Barwick:
Invited Keynote Talk: Data Mining and Statistical Methods for Analyzing Microarray Experiments.
444
Electronic Edition (link) BibTeX
- Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen:
Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI.
445-456
Electronic Edition (link) BibTeX
- David Stotts, Keith Lee, Ivan Rusyn:
Supporting Computational Systems Science: Genomic Analysis Tool Federations Using Aspects and AOP.
457-468
Electronic Edition (link) BibTeX
- Alexandra Martinez, Joachim Hammer, Sanjay Ranka:
BioDQ: Data Quality Estimation and Management for Genomics Databases.
469-480
Electronic Edition (link) BibTeX
- Juntao Li, Jianhua Liu, Karuturi R. Krishna Murthy:
Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis.
481-491
Electronic Edition (link) BibTeX
- Dimitris N. Politis:
Bagging Multiple Comparisons from Microarray Data.
492-503
Electronic Edition (link) BibTeX
- Shandar Ahmad:
Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products.
504-508
Electronic Edition (link) BibTeX
Copyright © Sat May 16 23:24:54 2009
by Michael Ley (ley@uni-trier.de)
