3. ISBRA 2007:
Atlanta,
GA,
USA
Ion I. Mandoiu, Alexander Zelikovsky (Eds.):
Bioinformatics Research and Applications, Third International Symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings.
Lecture Notes in Computer Science 4463 Springer 2007, ISBN 978-3-540-72030-0 BibTeX
- Xubo Fei, Shiyong Lu, Horia F. Pop, Lily R. Liang:
GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters.
1-12
Electronic Edition (link) BibTeX
- Fang-Xiang Wu:
Significance Analysis of Time-Course Gene Expression Profiles.
13-24
Electronic Edition (link) BibTeX
- Juntao Li, Jianhua Liu, Karuturi R. Krishna Murthy:
Data-Driven Smoothness Enhanced Variance Ratio Test to Unearth Responsive Genes in 0-Time Normalized Time-Course Microarray Data.
25-36
Electronic Edition (link) BibTeX
- Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ravi, Russell Schwartz:
Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming.
37-48
Electronic Edition (link) BibTeX
- Róbert Busa-Fekete, András Kocsor, Csaba Bagyinka:
A Multi-Stack Based Phylogenetic Tree Building Method.
49-60
Electronic Edition (link) BibTeX
- Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance.
61-72
Electronic Edition (link) BibTeX
- Qihua Tan, Jesper Dahlgaard, Basem M. Abdallah, Werner Vach, Moustapha Kassem, Torben A. Kruse:
A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with Replications.
73-84
Electronic Edition (link) BibTeX
- Roy Varshavsky, David Horn, Michal Linial:
Clustering Algorithms Optimizer: A Framework for Large Datasets.
85-96
Electronic Edition (link) BibTeX
- Jahangheer S. Shaik, Mohammed Yeasin:
Ranking Function Based on Higher Order Statistics (RF-HOS) for Two-Sample Microarray Experiments.
97-108
Electronic Edition (link) BibTeX
- Patricia Buendia, Giri Narasimhan:
Searching for Recombinant Donors in a Phylogenetic Network of Serial Samples.
109-120
Electronic Edition (link) BibTeX
- Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls.
121-132
Electronic Edition (link) BibTeX
- Frederick Cohan, Danny Krizanc, Yun Lu:
Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach.
133-144
Electronic Edition (link) BibTeX
- Ming Li:
Invited Talk: Modern Homology Search.
145
Electronic Edition (link) BibTeX
- Pramod K. Gupta, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Satoru Miyano:
Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data.
146-157
Electronic Edition (link) BibTeX
- Italo Zoppis, Daniele Merico, Marco Antoniotti, Bud Mishra, Giancarlo Mauri:
Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods.
158-169
Electronic Edition (link) BibTeX
- George Lee, Carlos Rodriguez, Anant Madabhushi:
An Empirical Comparison of Dimensionality Reduction Methods for Classifying Gene and Protein Expression Datasets.
170-181
Electronic Edition (link) BibTeX
- Robert J. Calin-Jageman, Chao Xie, Yi Pan, Art Vandenberg, Paul S. Katz:
NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid Environment.
182-191
Electronic Edition (link) BibTeX
- Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova:
An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence Datasets.
192-202
Electronic Edition (link) BibTeX
- Gordana Derado, F. DuBois Bowman, Rajan Patel, Mary Newell, Brani Vidakovic:
Wavelet Image Interpolation (WII): A Wavelet-Based Approach to Enhancement of Digital Mammography Images.
203-214
Electronic Edition (link) BibTeX
- Yanchao Wang, Rajshekhar Sunderraman, Piyaphol Phoungphol:
High Level Programming Environment System for Protein Structure Data.
215-226
Electronic Edition (link) BibTeX
- Kung-Hua Chang, Yong Kyun Kwon, Douglas Stott Parker Jr.:
Finding Minimal Sets of Informative Genes in Microarray Data.
227-236
Electronic Edition (link) BibTeX
- Li Chen, Dmitry B. Goldgof, Lawrence O. Hall, Steven Eschrich:
Noise-Based Feature Perturbation as a Selection Method for Microarray Data.
237-247
Electronic Edition (link) BibTeX
- Igor Trajkovski, Nada Lavrac:
Efficient Generation of Biologically Relevant Enriched Gene Sets.
248-259
Electronic Edition (link) BibTeX
- Sudha Balla, Sanguthevar Rajasekaran:
Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome Data.
260-269
Electronic Edition (link) BibTeX
- Scott F. Smith:
A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNA.
270-281
Electronic Edition (link) BibTeX
- Raja Loganantharaj:
Extensions of Naive Bayes and Their Applications to Bioinformatics.
282-292
Electronic Edition (link) BibTeX
- Marília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier:
The Solution Space of Sorting by Reversals.
293-304
Electronic Edition (link) BibTeX
- Matthias Bernt, Daniel Merkle, Martin Middendorf:
A Fast and Exact Algorithm for the Perfect Reversal Median Problem.
305-316
Electronic Edition (link) BibTeX
- Lenwood S. Heath, Amrita Pati:
Genomic Signatures from DNA Word Graphs.
317-328
Electronic Edition (link) BibTeX
- Erliang Zeng, Giri Narasimhan:
Enhancing Motif Refinement by Incorporating Comparative Genomics Data.
329-337
Electronic Edition (link) BibTeX
- Hyunmin Kim, Katherina J. Kechris, Lawrence Hunter:
Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions.
338-349
Electronic Edition (link) BibTeX
- Allison N. Tegge, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, Bruce R. Southey:
Enhanced Prediction of Cleavage in Bovine Precursor Sequences.
350-360
Electronic Edition (link) BibTeX
- Mary Qu Yang, Laura Elnitski:
Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome.
361-371
Electronic Edition (link) BibTeX
- Mark J. Lawson, Liqing Zhang:
The Identification of Antisense Gene Pairs Through Available Software.
372-381
Electronic Edition (link) BibTeX
- Steinar Thorvaldsen, Elinor Ytterstad, Tor Flå:
Inferring Weak Adaptations and Selection Biases in Proteins from Composition and Substitution Matrices.
382-393
Electronic Edition (link) BibTeX
- Michael E. Sparks, Volker Brendel, Karin S. Dorman:
Markov Model Variants for Appraisal of Coding Potential in Plant DNA.
394-405
Electronic Edition (link) BibTeX
- Zheng Rong Yang:
Predicting Palmitoylation Sites Using a Regularised Bio-basis Function Neural Network.
406-417
Electronic Edition (link) BibTeX
- Hao Yu, Minlie Huang, Xiaoyan Zhu, Yabin Guo:
A Novel Kernel-Based Approach for Predicting Binding Peptides for HLA Class II Molecules.
418-429
Electronic Edition (link) BibTeX
- Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai:
A Database for Prediction of Unique Peptide Motifs as Linear Epitopes.
430-440
Electronic Edition (link) BibTeX
- Dan He:
A Novel Greedy Algorithm for the Minimum Common String Partition Problem.
441-452
Electronic Edition (link) BibTeX
- Mun-Ho Choi, In-Seon Jeong, Seung-Ho Kang, Hyeong-Seok Lim:
An Efficient Algorithm for Finding Gene-Specific Probes for DNA Microarrays.
453-464
Electronic Edition (link) BibTeX
- Chengpeng Bi:
Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm.
465-476
Electronic Edition (link) BibTeX
- Hyunsoo Kim, Haesun Park:
Cancer Class Discovery Using Non-negative Matrix Factorization Based on Alternating Non-negativity-Constrained Least Squares.
477-487
Electronic Edition (link) BibTeX
- Chen Liao, Shutao Li:
A Support Vector Machine Ensemble for Cancer Classification Using Gene Expression Data.
488-495
Electronic Edition (link) BibTeX
- Xiujuan Chen, Yichuan Zhao, Yan-Qing Zhang, Robert W. Harrison:
Combining SVM Classifiers Using Genetic Fuzzy Systems Based on AUC for Gene Expression Data Analysis.
496-505
Electronic Edition (link) BibTeX
- Dandan Song, Zhidong Deng:
A BP-SCFG Based Approach for RNA Secondary Structure Prediction with Consecutive Bases Dependency and Their Relative Positions Information.
506-517
Electronic Edition (link) BibTeX
- Minghui Jiang, Martin Mayne, Joel Gillespie:
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice.
518-529
Electronic Edition (link) BibTeX
- Xuezheng Fu, Bernard Chen, Yi Pan, Robert W. Harrison:
Statistical Estimate for the Size of the Protein Structural Vocabulary.
530-538
Electronic Edition (link) BibTeX
- Cui Lin, Shiyong Lu, Danqing Wu, Jing Hua, Otto Muzik:
Coclustering Based Parcellation of Human Brain Cortex Using Diffusion Tensor MRI.
539-550
Electronic Edition (link) BibTeX
- Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu:
An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes.
551-563
Electronic Edition (link) BibTeX
- Mudassir Fayyaz, Asifullah Khan, Adnan Mujahid, Alex Kavokin:
Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families Prediction.
564-576
Electronic Edition (link) BibTeX
- Mark Borodovsky:
Invited Talk: Ab Initio Gene Finding Engines: What Is Under the Hood.
577
Electronic Edition (link) BibTeX
- Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio:
Reconstruction of 3D Structures from Protein Contact Maps.
578-589
Electronic Edition (link) BibTeX
- Gulsah Altun, Hae-Jin Hu, Stefan Gremalschi, Robert W. Harrison, Yi Pan:
A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure Prediction.
590-600
Electronic Edition (link) BibTeX
- Amin R. Mazloom, Kalyan Basu, Subhrangsu S. Mandal, Mehran Sorourian, Sajal K. Das:
DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling Approach.
601-614
Electronic Edition (link) BibTeX
- Shiquan Wu, Jing Li:
Comparative Analysis of Gene-Coexpression Networks Across Species.
615-626
Electronic Edition (link) BibTeX
- Jizhen Zhao, Dongsheng Che, Liming Cai:
Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information.
627-637
Electronic Edition (link) BibTeX
- Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo:
Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain Level.
638-649
Electronic Edition (link) BibTeX
Copyright © Sat May 16 23:24:54 2009
by Michael Ley (ley@uni-trier.de)
