2008 |
24 | EE | Ilan Gronau,
Shlomo Moran,
Sagi Snir:
Fast and reliable reconstruction of phylogenetic trees with very short edges.
SODA 2008: 379-388 |
23 | EE | Sagi Snir,
Tamir Tuller:
Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models.
WABI 2008: 354-368 |
22 | EE | Michael D. Hendy,
Sagi Snir:
Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets.
IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 461-471 (2008) |
21 | EE | Shlomo Moran,
Sagi Snir:
Convex recolorings of strings and trees: Definitions, hardness results and algorithms.
J. Comput. Syst. Sci. 74(5): 850-869 (2008) |
20 | EE | Sagi Snir,
Tandy Warnow,
Satish Rao:
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm.
Journal of Computational Biology 15(1): 91-103 (2008) |
2007 |
19 | EE | Benny Chor,
Michael R. Fellows,
Mark A. Ragan,
Igor Razgon,
Frances A. Rosamond,
Sagi Snir:
Connected Coloring Completion for General Graphs: Algorithms and Complexity.
COCOON 2007: 75-85 |
18 | EE | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance.
ISBRA 2007: 61-72 |
17 | EE | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Efficient parsimony-based methods for phylogenetic network reconstruction.
Bioinformatics 23(2): 123-128 (2007) |
16 | EE | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Maximum likelihood of phylogenetic networks.
Bioinformatics 23(8): 1046-1047 (2007) |
15 | EE | Steven Skiena,
Sagi Snir:
Restricting SBH ambiguity via restriction enzymes.
Discrete Applied Mathematics 155(6-7): 857-867 (2007) |
14 | EE | Eleazar Eskin,
Sagi Snir:
Incorporating homologues into Sequence Embeddings for protein Analysis.
J. Bioinformatics and Computational Biology 5(3): 717-738 (2007) |
13 | EE | Shlomo Moran,
Sagi Snir:
Efficient approximation of convex recolorings.
J. Comput. Syst. Sci. 73(7): 1078-1089 (2007) |
2006 |
12 | EE | Sagi Snir,
Lior Pachter:
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes.
RECOMB 2006: 265-280 |
11 | EE | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Maximum likelihood of phylogenetic networks.
Bioinformatics 22(21): 2604-2611 (2006) |
10 | EE | Sagi Snir,
Satish Rao:
Using Max Cut to Enhance Rooted Trees Consistency.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 323-333 (2006) |
9 | EE | Benny Chor,
Amit Khetan,
Sagi Snir:
Maximum Likelihood Molecular Clock Comb: Analytic Solutions.
Journal of Computational Biology 13(3): 819-837 (2006) |
2005 |
8 | EE | Shlomo Moran,
Sagi Snir:
Efficient Approximation of Convex Recolorings.
APPROX-RANDOM 2005: 192-208 |
7 | | Eleazar Eskin,
Sagi Snir:
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space.
CIBCB 2005: 179-186 |
6 | EE | Shlomo Moran,
Satish Rao,
Sagi Snir:
Using Semi-definite Programming to Enhance Supertree Resolvability.
WABI 2005: 89-103 |
5 | EE | Shlomo Moran,
Sagi Snir:
Convex Recolorings of Strings and Trees: Definitions, Hardness Results and Algorithms.
WADS 2005: 218-232 |
4 | EE | Shlomo Moran,
Sagi Snir:
Efficient Approximation of Convex Recolorings
CoRR abs/cs/0505077: (2005) |
2003 |
3 | EE | Benny Chor,
Amit Khetan,
Sagi Snir:
Maximum likelihood on four taxa phylogenetic trees: analytic solutions.
RECOMB 2003: 76-83 |
2002 |
2 | EE | Steven Skiena,
Sagi Snir:
Restricting SBH Ambiguity via Restriction Enzymes.
WABI 2002: 404-417 |
2000 |
1 | EE | Shlomo Moran,
Sagi Snir:
Simple and efficient network decomposition and synchronization.
Theor. Comput. Sci. 243(1-2): 217-241 (2000) |