1. BIRD 2007: Berlin, Germany

Sepp Hochreiter, Roland Wagner (Eds.): Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings. Lecture Notes in Computer Science 4414 Springer 2007, ISBN 978-3-540-71232-9 BibTeX

Microarray and Systems Biology I (Networks)

Nicole Radde, Lars Kaderali:
Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data. 1-15
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Patrick Emmanuel Meyer, Kevin Kontos, Gianluca Bontempi:
Biological Network Inference Using Redundancy Analysis. 16-27
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Judit Kumuthini, Lionel Jouffe, Conrad Bessant:
A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data. 28-37
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Matthias Scholz:
Analysing Periodic Phenomena by Circular PCA. 38-47
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Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson:
Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets. 48-65
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Jano I. van Hemert, Richard A. Baldock:
Mining Spatial Gene Expression Data for Association Rules. 66-76
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Lars Kaderali:
Individualized Predictions of Survival Time Distributions from Gene Expression Data Using a Bayesian MCMC Approach. 77-89
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Arno Fritsch, Katja Ickstadt:
Comparing Logic Regression Based Methods for Identifying SNP Interactions. 90-103
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Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils:
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei. 104-118
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Piyarat Nimmanpipug, Vannajan Sanghiran Lee, Jeerayut Chaijaruwanich, Sukon Prasitwattanaseree, Patrinee Traisathit:
Structural Screening of HIV-1 Protease/Inhibitor Docking by Non-parametric Binomial Distribution Test. 119-130
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Rafael Navajas-Pérez, Manuel Ruiz Rejón, Manuel A. Garrido-Ramos, José Luis Aznarte, Cristina Rubio-Escudero:
satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae). 131-139
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Jehan Zeb Shah, Naomie Salim:
A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive Chemical Compounds. 140-153
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Da Jiang, Shuigeng Zhou, Jihong Guan:
A Novel Method for Flux Distribution Computation in Metabolic Networks. 154-167
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James Lu, Heinz W. Engl, Rainer Machné, Peter Schuster:
Inverse Bifurcation Analysis of a Model for the Mammalian G ₁/ S Regulatory Module. 168-184
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Zelmina Lubovac, David Corne, Jonas Gamalielsson, Björn Olsson:
Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity. 185-198
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Elena Tsiporkova, Veselka Boeva:
Modelling and Simulation of the Genetic Phenomena of Additivity and Dominance via Gene Networks of Parallel Aggregation Processes. 199-211
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Qiwen Dong, Lei Lin, Xiaolong Wang:
Protein Remote Homology Detection Based on Binary Profiles. 212-223
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Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo:
Biological Sequences Encoding for Supervised Classification. 224-238
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Cinzia Pizzi, Pasi Rastas, Esko Ukkonen:
Fast Search Algorithms for Position Specific Scoring Matrices. 239-250
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Christelle Melo de Lima, Christian Gautier:
A Markovian Approach for the Segmentation of Chimpanzee Genome. 251-262
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Majid Beigi, Andreas Zell:
Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data. 263-277
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Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato:
Stem Kernels for RNA Sequence Analyses. 278-291
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Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh:
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. 292-302
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Susan Jones, Yoichi Mukarami:
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server. 303-313
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Shu-Yun Le, Jih-H. Chen:
Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences. 314-327
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Xiang Chen, Robert F. Murphy:
Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions. 328-342
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Ji Won Yoon, Simon J. Godsill, ChulHun Kang, Tae-Seong Kim:
Bayesian Inference for 2D Gel Electrophoresis Image Analysis. 343-356
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Simon W. Ginzinger, Thomas Gräupl, Volker Heun:
SimShiftDB: Chemical-Shift-Based Homology Modeling. 357-370
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Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann:
Annotation of LC/ESI-MS Mass Signals. 371-380
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Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht:
Stochastic Protein Folding Simulation in the d-Dimensional HP-Model. 381-394
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Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Yen Ou, Yen-Jen Oyang:
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction. 395-409
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Brijnesh J. Jain, Michael Lappe:
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem. 410-423
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Alexander Hinneburg, Andrea Porzel, Karina Wolfram:
An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra. 424-438
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Fabrice Camous, Stephen Blott, Alan F. Smeaton:
Ontology-Based MEDLINE Document Classification. 439-452
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Domenico Marra, Paolo Romano:
Integrating Mutations Data of the TP53 Human Gene in the Bioinformatics Network Environment. 453-463
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Mihail Halachev, Nematollaah Shiri, Anand Thamildurai:
Efficient and Scalable Indexing Techniques for Biological Sequence Data. 464-479
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