Kiyoshi Asai

2008
29	EE	Hisanori Kiryu, Taishin Kin, Kiyoshi Asai: Rfold: an exact algorithm for computing local base pairing probabilities. Bioinformatics 24(3): 367-373 (2008)
2007
28	EE	Kinya Okada, Kiyoshi Asai, Masanori Arita: Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. APBC 2007: 317-326
27	EE	Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato: Stem Kernels for RNA Sequence Analyses. BIRD 2007: 278-291
26	EE	Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama, Kiyoshi Asai: Multi-Task Learning via Conic Programming. NIPS 2007
25	EE	Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai: Murlet: a practical multiple alignment tool for structural RNA sequences. Bioinformatics 23(13): 1588-1598 (2007)
24	EE	Hisanori Kiryu, Taishin Kin, Kiyoshi Asai: Robust prediction of consensus secondary structures using averaged base pairing probability matrices. Bioinformatics 23(4): 434-441 (2007)
23	EE	Yasubumi Sakakibara, Kris Popendorf, Nana Ogawa, Kiyoshi Asai, Kengo Sato: Stem Kernels for RNA Sequence Analyses. J. Bioinformatics and Computational Biology 5(5): 1103-1122 (2007)
22	EE	Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, Kiyoshi Asai: fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. Nucleic Acids Research 35(Database-Issue): 145-148 (2007)
2006
21	EE	Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai: SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. Bioinformatics 22(14): 1723-1729 (2006)
20	EE	Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai: Mining frequent stem patterns from unaligned RNA sequences. Bioinformatics 22(20): 2480-2487 (2006)
2005
19	EE	Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai: Selective integration of multiple biological data for supervised network inference. Bioinformatics 21(10): 2488-2495 (2005)
18	EE	Hisanori Kiryu, Taku Oshima, Kiyoshi Asai: Extracting relations between promoter sequences and their strengths from microarray data. Bioinformatics 21(7): 1062-1068 (2005)
17	EE	Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai: Accurate extraction of functional associations between proteins based on common interaction partners and common domains. Bioinformatics 21(9): 2043-2048 (2005)
2004
16	EE	Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai: A New Variational Framework for Rigid-Body Alignment. SSPR/SPR 2004: 171-179
15		Koji Tsuda, Shinsuke Uda, Taishin Kin, Kiyoshi Asai: Minimizing the Cross Validation Error to Mix Kernel Matrices of Heterogeneous Biological Data. Neural Processing Letters 19(1): 63-72 (2004)
2003
14	EE	Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono, Hitoshi Iba: GA-Based Inference of Euler Angles for Single Particle Analysis. GECCO 2003: 2288-2300
13	EE	Koji Tsuda, Shotaro Akaho, Kiyoshi Asai: The em Algorithm for Kernel Matrix Completion with Auxiliary Data. Journal of Machine Learning Research 4: 67-81 (2003)
2002
12		Masanori Arita, Koji Tsuda, Kiyoshi Asai: Modeling splicing sites with pairwise correlations. ECCB 2002: 27-34
11		Koji Tsuda, Taishin Kin, Kiyoshi Asai: Marginalized kernels for biological sequences. ISMB 2002: 268-275
10	EE	Koji Tsuda, Shotaro Akaho, Kiyoshi Asai: Approximating Incomplete Kernel Matrices by the em Algorithm CoRR cs.LG/0211007: (2002)
2000
9		Masanori Arita, Kiyoshi Asai, Takaaki Nishioka: Reconstructing Metabolic Pathways with New Enzyme Classification. German Conference on Bioinformatics 2000: 99-106
1998
8		Tetsushi Yada, Yasushi Totoki, Masato Ishikawa, Kiyoshi Asai, Kenta Nakai: Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. Bioinformatics 14(4): 317-325 (1998)
1997
7		Yutaka Ueno, Kiyoshi Asai: A New Plug-In Software Architecture Applied for a Portable Molecular Structure Browser. ISMB 1997: 329-332
1994
6		Masayuki Akahoshi, Kentaro Onizuka, Masato Ishikawa, Kiyoshi Asai: A Three-Dimensional Animation System for Protein Folding Simulation. HICSS (5) 1994: 173-182
5		Kentaro Onizuka, Hiroshi Tsuda, Masato Ishikawa, Akira Aiba, Kiyoshi Asai, Katunobu Ito: Protein Structure Prediction Based on Multi-Level Description. HICSS (5) 1994: 355-364
4		Kentaro Onizuka, Masayuki Akahosi, Masato Ishikawa, Kiyoshi Asai: The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein. ISMB 1994: 314-321
1993
3		Kentaro Onizuka, Stephen T. C. Wong, Masato Ishikawa, Kiyoshi Asai: A Multi-Level Description Scheme of Protein Conformation. ISMB 1993: 301-309
2		Hidetoshi Tanaka, Masato Ishikawa, Kiyoshi Asai, Akihiko Konagaya: Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. ISMB 1993: 395-401
1		Kiyoshi Asai, Satoru Hayamizu, Ken'ichi Handa: Prediction of protein secondary structure by the hidden Markov model. Computer Applications in the Biosciences 9(2): 141-146 (1993)

Coauthor Index

1	Akira Aiba	[5]
2	Shotaro Akaho	[10] [13]
3	Masayuki Akahoshi	[6]
4	Masayuki Akahosi	[4]
5	Masanori Arita	[9] [12] [28]
6	Michiaki Hamada	[20]
7	Ken'ichi Handa	[1]
8	Satoru Hayamizu	[1]
9	Hitoshi Iba	[14]
10	Masato Ishikawa	[2] [3] [4] [5] [6] [8]
11	Katsunori Isono	[14]
12	Katunobu Ito	[5]
13	Shigehiko Kanaya	[17]
14	Hisashi Kashima	[26]
15	Tsuyoshi Kato	[16] [19] [26]
16	Yuki Kimura	[22]
17	Taishin Kin	[11] [15] [20] [21] [22] [24] [25] [29]
18	Hisanori Kiryu	[18] [24] [25] [29]
19	Aya Kojima	[22]
20	Takashi Komori	[22]
21	Akihiko Konagaya	[2]
22	Taku Kudo	[20]
23	Kenta Nakai	[8]
24	Takaaki Nishioka	[9]
25	Nana Ogawa	[23]
26	Kinya Okada	[17] [28]
27	Hiroaki Okida	[22]
28	Kentaro Onizuka	[3] [4] [5] [6]
29	Yukiteru Ono	[22]
30	Taku Oshima	[18]
31	Kris Popendorf	[23]
32	Shusuke Saeki	[14]
33	Yasubumi Sakakibara	[23] [27]
34	Kengo Sato	[23] [27]
35	Masashi Sugiyama	[26]
36	Yasuo Tabei	[21] [25]
37	Katsutoshi Takahashi	[14]
38	Hidetoshi Tanaka	[2]
39	Goro Terai	[22]
40	Kentaro Tomii	[16]
41	Yasushi Totoki	[8]
42	Hiroshi Tsuda	[5]
43	Koji Tsuda	[10] [11] [12] [13] [15] [16] [19] [20] [21]
44	Shinsuke Uda	[15]
45	Yutaka Ueno	[7] [14]
46	Stephen T. C. Wong	[3]
47	Tetsushi Yada	[8]
48	Kouichirou Yamada	[22]
49	Yasuhiko Yoshinari	[22]

Colors in the list of coauthors