BICoB 2009:
New Orleans,
LA,
USA
Sanguthevar Rajasekaran (Ed.):
Bioinformatics and Computational Biology, First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings.
Lecture Notes in Computer Science 5462 Springer 2009, ISBN 978-3-642-00726-2 BibTeX
Invited Talks
- Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pandey, Michael Steinbach, Vipin Kumar:
Association Analysis Techniques for Bioinformatics Problems.
1-13
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- Eric Banks, Elena Nabieva, Bernard Chazelle, Ryan Peterson, Mona Singh:
Analyzing and Interrogating Biological Networks (Abstract).
14-15
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- Vladimir Filkov:
From Architecture to Function (and Back) in Bio-networks.
16-17
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- Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu:
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants.
18-29
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- Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru:
Assembly of Large Genomes from Paired Short Reads.
30-43
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- Weiming Li, Bin Ma, Kaizhong Zhang:
Amino Acid Classification and Hash Seeds for Homology Search.
44-51
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- Ion I. Mandoiu:
Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads.
52-53
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- Satoru Miyano, Rui Yamaguchi, Yoshinori Tamada, Masao Nagasaki, Seiya Imoto:
Gene Networks Viewed through Two Models.
54-66
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- Corban G. Rivera, T. M. Murali:
Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper.
67-78
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- Thomas K. F. Wong, S. M. Yiu, T. W. Lam, Wing-Kin Sung:
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning.
79-89
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Refereed Papers
- Sahar Al Seesi, Sanguthevar Rajasekaran, Reda A. Ammar:
RNA Pseudoknot Folding through Inference and Identification Using TAGRNA.
90-101
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- Sébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu:
Comparing Bacterial Genomes by Searching Their Common Intervals.
102-113
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- Mukul S. Bansal, Wen-Chieh Chang, Oliver Eulenstein, David Fernández-Baca:
Generalized Binary Tanglegrams: Algorithms and Applications.
114-125
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- Felix Bollenbeck, Stephanie Kaspar, Hans-Peter Mock, Diana Weier, Udo Seiffert:
Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data.
126-138
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- Christina Boucher, Daniel G. Brown:
Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding.
139-150
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- Doruk Bozdag, Jeffrey D. Parvin, Ümit V. Çatalyürek:
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets.
151-163
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- Wei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu:
Computational Protocol for Screening GPI-anchored Proteins.
164-175
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- Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer:
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors.
176-186
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- Didier Dréau, Dimitre Stanimirov, Ted Carmichael, Mirsad Hadzikadic:
An Agent-Based Model of Solid Tumor Progression.
187-198
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- Difeng Dong, Chun-Ying Cui, Benjamin Mow, Limsoon Wong:
Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma.
199-210
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- Shantanu Dutt, Yang Dai, Huan Ren, Joel Fontanarosa:
Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach.
211-223
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- Cesim Erten, Melih Sözdinler:
Biclustering Expression Data Based on Expanding Localized Substructures.
224-235
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- Alvaro J. González, Li Liao:
Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction.
236-247
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- Jianjun Hu, Fan Zhang:
Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding.
248-258
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- Abu H. M. Kamal, Xingquan Zhu, Abhijit S. Pandya, Sam Hsu, Muhammad Shoaib:
The Impact of Gene Selection on Imbalanced Microarray Expression Data.
259-269
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- Matthieu Manceny, Marc Aiguier, Pascale Le Gall, Joan Hérisson, Ivan Junier, François Képès:
Spatial Information and Boolean Genetic Regulatory Networks.
270-281
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- Mylène Maurin, Morgan Magnin, Olivier H. Roux:
Modeling of Genetic Regulatory Network in Stochastic pi-Calculus.
282-294
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- Fangyuan Nan, Yaonan Wang, Xiaoping Ma:
fMRI Activation Detection by MultiScale Hidden Markov Model.
295-306
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- Carl Nettelblad, Sverker Holmgren, Lucy Crooks, Örjan Carlborg:
cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models.
307-319
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- Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Huang, Ümit V. Çatalyürek, Kun Huang:
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
320-330
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- Hyun Jung Park, Tiffani L. Williams:
A Fitness Distance Correlation Measure for Evolutionary Trees.
331-342
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- Allison Regier, Michael Olson, Scott J. Emrich:
Alignment and Analysis of Closely Related Genomes.
343-352
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- Eric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper:
Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements.
353-361
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- Fahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi, Niko Beerenwinkel:
Multiple Sequence Alignment System for Pyrosequencing Reads.
362-375
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- Xinghua Shi, Rick L. Stevens:
A Bayesian Approach to High-Throughput Biological Model Generation.
376-387
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- Michael Slavik, Xingquan Zhu, Imad Mahgoub, Muhammad Shoaib:
Parallel Selection of Informative Genes for Classification.
388-399
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- Jaroslaw Smieja:
Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways.
400-408
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- Stephen Tyree, Rayus Kuplicki, Trevor Sarratt, Scott Fujan, John Hale:
GridSPiM: A Framework for Simple Locality and Containment in the Stochastic pi-Calculus.
409-423
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- Duygu Ucar, Fatih Altiparmak, Hakan Ferhatosmanoglu, Srinivasan Parthasarathy:
Mutual Information Based Extrinsic Similarity for Microarray Analysis.
424-436
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- Hari Krishna Yalamanchili, Nita Parekh:
Graph Spectral Approach for Identifying Protein Domains.
437-448
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Copyright © Sat May 16 22:59:28 2009
by Michael Ley (ley@uni-trier.de)
