| 2009 |
|---|
| 78 | EE | Doruk Bozdag,
Jeffrey D. Parvin,
Ümit V. Çatalyürek:
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets.
BICoB 2009: 151-163 |
| 77 | EE | Hatice Gulcin Ozer,
Doruk Bozdag,
Terry Camerlengo,
Jiejun Wu,
Yi-Wen Huang,
Timothy D. R. Hartley,
Jeffrey D. Parvin,
Tim Huang,
Ümit V. Çatalyürek,
Kun Huang:
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
BICoB 2009: 320-330 |
| 76 | EE | Sivaramakrishnan Narayanan,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Joel H. Saltz:
Parallel materialization of large ABoxes.
SAC 2009: 1257-1261 |
| 75 | EE | Selnur Erdal,
Ümit V. Çatalyürek,
Philip R. O. Payne,
Joel H. Saltz,
Jyoti Kamal,
Metin N. Gurcan:
A Knowledge-Anchored Integrative Image Search and Retrieval System.
J. Digital Imaging 22(2): 166-182 (2009) |
| 2008 |
|---|
| 74 | EE | Gaurav Khanna,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz,
Rajkumar Kettimuthu,
Ian T. Foster:
Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP.
HPDC 2008: 225-226 |
| 73 | EE | Nagavijayalakshmi Vydyanathan,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz:
A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows.
ICPP 2008: 254-261 |
| 72 | EE | Timothy D. R. Hartley,
Ümit V. Çatalyürek,
Antonio Ruiz,
Francisco D. Igual,
Rafael Mayo,
Manuel Ujaldon:
Biomedical image analysis on a cooperative cluster of GPUs and multicores.
ICS 2008: 15-25 |
| 71 | EE | Gaurav Khanna,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Rajkumar Kettimuthu,
P. Sadayappan,
Joel H. Saltz:
A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP.
IPDPS 2008: 1-12 |
| 70 | EE | Joel H. Saltz,
Scott Oster,
Shannon Hastings,
Stephen Langella,
Renato Ferreira,
J. Permar,
Ashish Sharma,
David Ervin,
Tony Pan,
Ümit V. Çatalyürek,
Tahsin M. Kurç:
Translational research design templates, Grid computing, and HPC.
IPDPS 2008: 1-15 |
| 69 | EE | Gaurav Khanna,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Rajkumar Kettimuthu,
P. Sadayappan,
Ian T. Foster,
Joel H. Saltz:
Using overlays for efficient data transfer over shared wide-area networks.
SC 2008: 47 |
| 68 | EE | Vijay S. Kumar,
Benjamin Rutt,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
T. C. Pan,
Sunny Chow,
Stephan Lamont,
Maryann E. Martone,
Joel H. Saltz:
Large-Scale Biomedical Image Analysis in Grid Environments.
IEEE Transactions on Information Technology in Biomedicine 12(2): 154-161 (2008) |
| 67 | EE | Doruk Bozdag,
Assefaw Hadish Gebremedhin,
Fredrik Manne,
Erik G. Boman,
Ümit V. Çatalyürek:
A framework for scalable greedy coloring on distributed-memory parallel computers.
J. Parallel Distrib. Comput. 68(4): 515-535 (2008) |
| 2007 |
|---|
| 66 | EE | Antonio Ruiz,
Olcay Sertel,
Manuel Ujaldon,
Ümit V. Çatalyürek,
Joel H. Saltz,
Metin N. Gurcan:
Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma.
BIBM 2007: 78-88 |
| 65 | EE | Tulio Tavares,
George Teodoro,
Tahsin M. Kurç,
Renato Ferreira,
Dorgival Olavo Guedes Neto,
Wagner Meira Jr.,
Ümit V. Çatalyürek,
Shannon Hastings,
Scott Oster,
Stephen Langella,
Joel H. Saltz:
An Efficient and Reliable Scientific Workflow System.
CCGRID 2007: 445-452 |
| 64 | EE | Vijay S. Kumar,
Tahsin M. Kurç,
Jun Kong,
Ümit V. Çatalyürek,
Metin N. Gurcan,
Joel H. Saltz:
Performance vs. accuracy trade-offs for large-scale image analysis applications.
CLUSTER 2007: 100-109 |
| 63 | EE | Nagavijayalakshmi Vydyanathan,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz:
Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters.
Euro-Par 2007: 173-183 |
| 62 | EE | Gaurav Khanna,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz:
Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters.
Euro-Par 2007: 214-223 |
| 61 | EE | Li Weng,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Gagan Agrawal,
Joel H. Saltz:
Optimizing multiple queries on scientific datasets with partial replicas.
GRID 2007: 259-266 |
| 60 | EE | Ümit V. Çatalyürek,
Erik G. Boman,
Karen D. Devine,
Doruk Bozdag,
Robert Heaphy,
Lee Ann Riesen:
Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations.
IPDPS 2007: 1-11 |
| 59 | EE | Bhupesh Bansal,
Ümit V. Çatalyürek,
Jacqueline Chame,
Chun Chen,
Ewa Deelman,
Yolanda Gil,
Mary W. Hall,
Vijay Kumar,
Tahsin M. Kurç,
Kristina Lerman,
Aiichiro Nakano,
Yoon-Ju Lee Nelson,
Joel H. Saltz,
Ashish Sharma,
Priya Vashishta:
Intelligent Optimization of Parallel and Distributed Applications.
IPDPS 2007: 1-6 |
| 58 | EE | Sriram Krishnamoorthy,
Ümit V. Çatalyürek,
Jarek Nieplocha,
Atanas Rountev,
P. Sadayappan:
A global address space framework for locality aware scheduling of block-sparse computations.
IPDPS 2007: 1-8 |
| 57 | EE | Tahsin M. Kurç,
Xi Zhang,
Manish Parashar,
Hector Klie,
Mary F. Wheeler,
Ümit V. Çatalyürek,
Joel H. Saltz:
Dynamic Data-Driven Systems Approach for Simulation Based Optimizations.
International Conference on Computational Science (1) 2007: 1213-1221 |
| 2006 |
|---|
| 56 | EE | Nagavijayalakshmi Vydyanathan,
Sriram Krishnamoorthy,
Gerald Sabin,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz:
Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications.
CLUSTER 2006 |
| 55 | EE | Timothy D. R. Hartley,
Ümit V. Çatalyürek,
Füsun Özgüner,
Andy Yoo,
Scott Kohn,
Keith W. Henderson:
MSSG: A Framework for Massive-Scale Semantic Graphs.
CLUSTER 2006 |
| 54 | EE | Gaurav Khanna,
Nagavijayalakshmi Vydyanathan,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Sriram Krishnamoorthy,
P. Sadayappan,
Joel H. Saltz:
Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O.
HPDC 2006: 241-252 |
| 53 | EE | Li Weng,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Gagan Agrawal,
Joel H. Saltz:
Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries.
ICPP 2006: 271-280 |
| 52 | EE | Nagavijayalakshmi Vydyanathan,
Sriram Krishnamoorthy,
Gerald Sabin,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz:
An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications.
ICPP 2006: 443-450 |
| 51 | EE | Sivaramakrishnan Narayanan,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz:
On Creating Efficient Object-relational Views of Scientific Datasets.
ICPP 2006: 551-558 |
| 50 | EE | Doruk Bozdag,
Ümit V. Çatalyürek,
Füsun Özgüner:
A task duplication based bottom-up scheduling algorithm for heterogeneous environments.
IPDPS 2006 |
| 49 | EE | Sriram Krishnamoorthy,
Ümit V. Çatalyürek,
Jarek Nieplocha,
P. Sadayappan:
An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming model.
IPDPS 2006 |
| 48 | EE | Sriram Krishnamoorthy,
Ümit V. Çatalyürek,
Jarek Nieplocha,
Atanas Rountev,
P. Sadayappan:
An extensible global address space framework with decoupled task and data abstractions.
IPDPS 2006 |
| 47 | EE | Karen D. Devine,
Erik G. Boman,
R. T. Heaphy,
Rob H. Bisseling,
Ümit V. Çatalyürek:
Parallel hypergraph partitioning for scientific computing.
IPDPS 2006 |
| 46 | EE | Gaurav Khanna,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
P. Sadayappan,
Joel H. Saltz:
A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing.
JSSPP 2006: 141-160 |
| 45 | EE | Duygu Ucar,
Sitaram Asur,
Ümit V. Çatalyürek,
Srinivasan Parthasarathy:
Improving Functional Modularity in Protein-Protein Interactions Graphs Using Hub-Induced Subgraphs.
PKDD 2006: 371-382 |
| 44 | EE | Vijay S. Kumar,
Benjamin Rutt,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz,
Sunny Chow,
Stephan Lamont,
Maryann E. Martone:
Imaging and visual analysis - Large image correction and warping in a cluster environment.
SC 2006: 79 |
| 43 | EE | Sriram Krishnamoorthy,
Ümit V. Çatalyürek,
Jarek Nieplocha,
Atanas Rountev,
P. Sadayappan:
Data management and query - Hypergraph partitioning for automatic memory hierarchy management.
SC 2006: 98 |
| 2005 |
|---|
| 42 | EE | Li Weng,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Gagan Agrawal,
Joel H. Saltz:
Servicing range queries on multidimensional datasets with partial replicas.
CCGRID 2005: 726-733 |
| 41 | EE | Gaurav Khanna,
Nagavijayalakshmi Vydyanathan,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Pete Wyckoff,
Joel H. Saltz,
P. Sadayappan:
A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O.
CCGRID 2005: 792-799 |
| 40 | EE | Benjamin Rutt,
Vijay S. Kumar,
Tony Pan,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz,
Yujun Wang:
Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying.
CLUSTER 2005: 1-10 |
| 39 | EE | Sivaramakrishnan Narayanan,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz:
Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services.
DMG 2005: 129-142 |
| 38 | EE | Erik G. Boman,
Doruk Bozdag,
Ümit V. Çatalyürek,
Assefaw Hadish Gebremedhin,
Fredrik Manne:
A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers.
Euro-Par 2005: 241-251 |
| 37 | EE | Doruk Bozdag,
Ümit V. Çatalyürek,
Assefaw Hadish Gebremedhin,
Fredrik Manne,
Erik G. Boman,
Füsun Özgüner:
A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers.
HPCC 2005: 796-806 |
| 36 | EE | Doruk Bozdag,
Füsun Özgüner,
Eylem Ekici,
Ümit V. Çatalyürek:
A Task Duplication Based Scheduling Algorithm Using Partial Schedules.
ICPP 2005: 630-637 |
| 35 | EE | Manish Parashar,
Vincent Matossian,
Wolfgang Bangerth,
Hector Klie,
Benjamin Rutt,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz,
Mary F. Wheeler:
Towards Dynamic Data-Driven Optimization of Oil Well Placement.
International Conference on Computational Science (2) 2005: 656-663 |
| 34 | | Ümit V. Çatalyürek,
Shannon Hastings,
Kun Huang,
Vijay S. Kumar,
Tahsin M. Kurç,
Stephen Langella,
Sivaramakrishnan Narayanan,
Scott Oster,
Tony Pan,
Benjamin Rutt,
Xi Zhang,
Joel H. Saltz:
Supporting Large Scale Medical and Scientific Datasets.
PARCO 2005: 3-14 |
| 33 | EE | Shannon Hastings,
Stephen Langella,
Scott Oster,
Tahsin M. Kurç,
Tony Pan,
Ümit V. Çatalyürek,
Dan Janies,
Joel H. Saltz:
Grid-based management of biomedical data using an XML-based distributed data management system.
SAC 2005: 105-109 |
| 32 | EE | Andy Yoo,
Edmond Chow,
Keith W. Henderson,
Will McLendon III,
Bruce Hendrickson,
Ümit V. Çatalyürek:
A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L.
SC 2005: 25 |
| 31 | EE | Tahsin M. Kurç,
Ümit V. Çatalyürek,
Xi Zhang,
Joel H. Saltz,
Ryan Martino,
Mary F. Wheeler,
Malgorzata Peszynska,
Alan Sussman,
Christian Hansen,
Mrinal K. Sen,
Roustam Seifoullaev,
Paul L. Stoffa,
Carlos Torres-Verdin,
Manish Parashar:
A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies.
Concurrency - Practice and Experience 17(11): 1441-1467 (2005) |
| 30 | EE | Manish Parashar,
Hector Klie,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Wolfgang Bangerth,
Vincent Matossian,
Joel H. Saltz,
Mary F. Wheeler:
Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies.
Future Generation Comp. Syst. 21(1): 19-26 (2005) |
| 29 | EE | Shannon Hastings,
Matheus Ribeiro,
Stephen Langella,
Scott Oster,
Ümit V. Çatalyürek,
Tony Pan,
Kun Huang,
Renato Ferreira,
Joel H. Saltz,
Tahsin M. Kurç:
XML database support for distributed execution of data-intensive scientific workflows.
SIGMOD Record 34(3): 50-55 (2005) |
| 2004 |
|---|
| 28 | EE | Xi Zhang,
Tony Pan,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Joel H. Saltz:
Serving queries to multi-resolution datasets on disk-based storage clusters.
CCGRID 2004: 490-498 |
| 27 | EE | Stephen Langella,
Shannon Hastings,
Scott Oster,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz:
A distributed data management middleware for data-driven application systems.
CLUSTER 2004: 267-276 |
| 26 | EE | Nagavijayalakshmi Vydyanathan,
Gaurav Khanna,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Pete Wyckoff,
Joel H. Saltz,
P. Sadayappan:
Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O.
GRID 2004: 235-242 |
| 25 | EE | Li Weng,
Gagan Agrawal,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Sivaramakrishnan Narayanan,
Joel H. Saltz:
An Approach for Automatic Data Virtualization.
HPDC 2004: 24-33 |
| 24 | EE | Xi Zhang,
Tahsin M. Kurç,
Tony Pan,
Ümit V. Çatalyürek,
Sivaramakrishnan Narayanan,
Pete Wyckoff,
Joel H. Saltz:
Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms.
HPDC 2004: 4-13 |
| 23 | EE | Manish Parashar,
Hector Klie,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Vincent Matossian,
Joel H. Saltz,
Mary F. Wheeler:
Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies.
International Conference on Computational Science 2004: 805-812 |
| 22 | EE | Li Weng,
Gagan Agrawal,
Ümit V. Çatalyürek,
Joel H. Saltz:
Supporting SQL-3 Aggregations on Grid-Based Data Repositories.
LCPC 2004: 283-298 |
| 2003 |
|---|
| 21 | EE | Shannon Hastings,
Tahsin M. Kurç,
Stephen Langella,
Ümit V. Çatalyürek,
Tony Pan,
Joel H. Saltz:
Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications.
CCGRID 2003: 36-43 |
| 20 | EE | Sivaramakrishnan Narayanan,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Xi Zhang,
Joel H. Saltz:
Applying Database Support for Large Scale Data Driven Science in Distributed Environments.
GRID 2003: 141-148 |
| 19 | EE | Pavan Balaji,
Jiesheng Wu,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Dhabaleswar K. Panda,
Joel H. Saltz:
Impact of High Performance Sockets on Data Intensive Applications.
HPDC 2003: 24-33 |
| 18 | EE | Joel H. Saltz,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Mike Gray,
Shannon Hastings,
Stephen Langella,
Sivaramakrishnan Narayanan,
Ryan Martino,
Steven Bryant,
Malgorzata Peszynska,
Mary F. Wheeler,
Alan Sussman,
Michael D. Beynon,
Christian Hansen,
Don Stredney,
Dennis Sessanna:
Driving Scientific Applications by Data in Distributed Environments.
International Conference on Computational Science 2003: 355-364 |
| 17 | | Ümit V. Çatalyürek,
Mike Gray,
Tahsin M. Kurç,
Joel H. Saltz,
Eric Stahlberg,
Renato Ferreira:
A Component-based Implementation of Multiple Sequence Alignment.
SAC 2003: 122-126 |
| 16 | EE | Tahsin M. Kurç,
Feng Lee,
Gagan Agrawal,
Ümit V. Çatalyürek,
Renato Ferreira,
Joel H. Saltz:
Optimizing Reduction Computations In a Distributed Environment.
SC 2003: 9 |
| 15 | | Ümit V. Çatalyürek,
Michael D. Beynon,
Chialin Chang,
Tahsin M. Kurç,
Alan Sussman,
Joel H. Saltz:
The virtual microscope.
IEEE Transactions on Information Technology in Biomedicine 7(4): 230-248 (2003) |
| 14 | EE | Sivaramakrishnan Narayanan,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Joel H. Saltz:
Database Support for Data-Driven Scientific Applications in the Grid.
Parallel Processing Letters 13(2): 245-271 (2003) |
| 2002 |
|---|
| 13 | EE | Michael D. Beynon,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Alan Sussman,
Joel H. Saltz:
Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems.
IPDPS 2002 |
| 12 | EE | Ümit V. Çatalyürek,
Eric Stahlberg,
Renato Ferreira,
Tahsin M. Kurç,
Joel H. Saltz:
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments.
IPDPS 2002 |
| 11 | EE | Matthew Spencer,
Renato Ferreira,
Michael D. Beynon,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Alan Sussman,
Joel H. Saltz:
Executing multiple pipelined data analysis operations in the grid.
SC 2002: 1-18 |
| 10 | | Michael D. Beynon,
Chialin Chang,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Alan Sussman,
Henrique Andrade,
Renato Ferreira,
Joel H. Saltz:
Processing large-scale multi-dimensional data in parallel and distributed environments.
Parallel Computing 28(5): 827-859 (2002) |
| 2001 |
|---|
| 9 | EE | Michael D. Beynon,
Alan Sussman,
Ümit V. Çatalyürek,
Tahsin M. Kurç,
Joel H. Saltz:
Performance Optimization for Data Intensive Grid Applications.
Active Middleware Services 2001: 97-105 |
| 8 | | Ümit V. Çatalyürek,
Cevdet Aykanat:
A Fine-Grain Hypergraph Model for 2D Decomposition of Sparse Matrices.
IPDPS 2001: 118 |
| 7 | | Chialin Chang,
Tahsin M. Kurç,
Alan Sussman,
Ümit V. Çatalyürek,
Joel H. Saltz:
A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation.
PPSC 2001 |
| 6 | EE | Ümit V. Çatalyürek,
Cevdet Aykanat:
A hypergraph-partitioning approach for coarse-grain decomposition.
SC 2001: 28 |
| 5 | EE | Tahsin M. Kurç,
Ümit V. Çatalyürek,
Chialin Chang,
Alan Sussman,
Joel H. Saltz:
Visualization of Large Data Sets with the Active Data Repository.
IEEE Computer Graphics and Applications 21(4): 24-33 (2001) |
| 4 | | Michael D. Beynon,
Tahsin M. Kurç,
Ümit V. Çatalyürek,
Chialin Chang,
Alan Sussman,
Joel H. Saltz:
Distributed processing of very large datasets with DataCutter.
Parallel Computing 27(11): 1457-1478 (2001) |
| 1999 |
|---|
| 3 | EE | Ümit V. Çatalyürek,
Cevdet Aykanat:
Hypergraph-Partitioning-Based Decomposition for Parallel Sparse-Matrix Vector Multiplication.
IEEE Trans. Parallel Distrib. Syst. 10(7): 673-693 (1999) |
| 1996 |
|---|
| 2 | | Ümit V. Çatalyürek,
Cevdet Aykanat:
Decomposing Irregularly Sparse Matrices for Parallel Matrix-Vector Multiplication.
IRREGULAR 1996: 75-86 |
| 1995 |
|---|
| 1 | | Ali Pinar,
Ümit V. Çatalyürek,
Cevdet Aykanat,
Mustafa Pinar:
Decomposing Linear Programs for Parallel Solution.
PARA 1995: 473-482 |
