Niko Beerenwinkel

2009
16	EE	Fahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi, Niko Beerenwinkel: Multiple Sequence Alignment System for Pyrosequencing Reads. BICoB 2009: 362-375
2006
15	EE	Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig: Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194
14	EE	Tobias Sing, Niko Beerenwinkel: Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype. NIPS 2006: 1297-1304
2005
13		Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno: Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. LWA 2005: 234-239
12	EE	Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer: Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. PKDD 2005: 285-296
11	EE	Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer: Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinformatics 21(10): 2438-2446 (2005)
10	EE	Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer: ROCR: visualizing classifier performance in R. Bioinformatics 21(20): 3940-3941 (2005)
9	EE	Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer: Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinformatics 21(21): 3943-3950 (2005)
8	EE	Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer: Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics 21(9): 2106-2107 (2005)
7	EE	Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer: Learning Multiple Evolutionary Pathways from Cross-Sectional Data. Journal of Computational Biology 12(6): 584-598 (2005)
2004
6	EE	Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer: Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44
5		Tobias Sing, Niko Beerenwinkel, Thomas Lengauer: Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. ROCAI 2004: 89-96
2003
4	EE	Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig: Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25
3		Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter: Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Research 31(13): 3850-3855 (2003)
2001
2		Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig: Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130
1	EE	Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig: Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intelligent Systems 16(6): 35-41 (2001)

Coauthor Index

1	Thomas Berg	[9]
2	Patrick Braun	[9]
3	Joachim Büch	[15]
4	Francesca Ceccherini-Silberstein	[12] [13]
5	Martin Däumer	[3] [4] [6] [7] [9] [12] [15]
6	Andreas von Deimling	[11]
7	Gerd Fätkenheuer	[9] [12]
8	Roman Fischer	[9]
9	Christian Hartmann	[11]
10	Daniel Hoffmann	[1] [2] [3] [4] [6] [7] [8] [9] [12] [15]
11	Rolf Kaiser	[1] [2] [3] [4] [6] [7] [8] [9] [12] [15]
12	Ashfaq A. Khokhar	[16]
13	Klaus Korn	[1] [2] [3] [4] [9] [12]
14	Bernd Kupfer	[9]
15	Thomas Lengauer	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [15]
16	Mark Oette	[3] [9] [12]
17	Carlo-Federico Perno	[12] [13]
18	Jörg Rahnenführer	[6] [7] [8] [9] [11]
19	Jürgen K. Rockstroh	[9] [12]
20	Kirsten Roomp	[9] [15]
21	Fahad Saeed	[16]
22	Oliver Sander	[10]
23	Igor Savenkov	[9]
24	Barbara Schmidt	[1] [2]
25	Eugen Schülter	[15]
26	Wolfgang A. Schulz	[11]
27	Joachim Selbig	[1] [2] [3] [4] [6] [7] [8] [9] [15]
28	Saleta Sierra-Aragon	[15]
29	Tobias Sing	[5] [9] [10] [12] [13] [14] [15]
30	Valentina Svicher	[12] [13]
31	Hauke Walter	[1] [2] [3] [4] [9] [12]
32	Bernd Wullich	[11]
33	Osvaldo Zagordi	[16]

Colors in the list of coauthors