| 2009 |
|---|
| 71 | EE | Benjamin G. Jackson,
Patrick S. Schnable,
Srinivas Aluru:
Assembly of Large Genomes from Paired Short Reads.
BICoB 2009: 30-43 |
| 2008 |
|---|
| 70 | EE | Jaroslaw Zola,
Maneesha Aluru,
Srinivas Aluru:
Parallel Information Theory Based Construction of Gene Regulatory Networks.
HiPC 2008: 336-349 |
| 69 | EE | Sudip Seal,
Michael Moody,
Anna Ceguerra,
Simon Ringer,
Krishna Rajan,
Srinivas Aluru:
Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L.
ICPP 2008: 338-345 |
| 68 | EE | Benjamin G. Jackson,
Srinivas Aluru:
Parallel Construction of Bidirected String Graphs for Genome Assembly.
ICPP 2008: 346-353 |
| 67 | EE | Andrew Janowczyk,
Sharat Chandran,
Srinivas Aluru:
Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application.
ICVGIP 2008: 171-178 |
| 66 | EE | Abhinav Sarje,
Srinivas Aluru:
Parallel biological sequence alignments on the Cell Broadband Engine.
IPDPS 2008: 1-11 |
| 65 | EE | Srinivas Aluru:
Text Indexing.
Encyclopedia of Algorithms 2008 |
| 64 | EE | Benjamin G. Jackson,
Patrick S. Schnable,
Srinivas Aluru:
Consensus Genetic Maps as Median Orders from Inconsistent Sources.
IEEE/ACM Trans. Comput. Biology Bioinform. 5(2): 161-171 (2008) |
| 63 | EE | David A. Bader,
Srinivas Aluru:
High-performance computational biology.
Parallel Computing 34(11): 613-615 (2008) |
| 62 | EE | Michael Ott,
Jaroslaw Zola,
Srinivas Aluru,
Andrew D. Johnson,
Daniel Janies,
Alexandros Stamatakis:
Large-scale phylogenetic analysis on current HPC architectures.
Scientific Programming 16(2-3): 255-270 (2008) |
| 2007 |
|---|
| 61 | | Srinivas Aluru,
Manish Parashar,
Ramamurthy Badrinath,
Viktor K. Prasanna:
High Performance Computing - HiPC 2007, 14th International Conference, Goa, India, December 18-21, 2007, Proceedings
Springer 2007 |
| 60 | EE | Srinivas Aluru:
The Combinatorics of Sequencing the Corn Genome.
COCOON 2007: 1 |
| 59 | EE | Srinivas Aluru,
David A. Bader,
Anantharaman Kalyanaraman:
Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics.
IPDPS 2007: 13 |
| 58 | | Jaroslaw Zola,
Xiao Yang,
Adrian Rospondek,
Srinivas Aluru:
PARALLEL-TCOFFEE: A parallel multiple sequence aligner.
ISCA PDCS 2007: 248-253 |
| 57 | | Scott J. Emrich,
Anantharaman Kalyanaraman,
Srinivas Aluru:
Massively parallel expressed sequence tag clustering.
ISCA PDCS 2007: 254-261 |
| 56 | EE | Michael Ott,
Jaroslaw Zola,
Alexandros Stamatakis,
Srinivas Aluru:
Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L.
SC 2007: 4 |
| 55 | EE | Pang Ko,
Srinivas Aluru:
Optimal Self-adjusting Trees for Dynamic String Data in Secondary Storage.
SPIRE 2007: 184-194 |
| 54 | EE | Anantharaman Kalyanaraman,
Scott J. Emrich,
Patrick S. Schnable,
Srinivas Aluru:
Assembling genomes on large-scale parallel computers.
J. Parallel Distrib. Comput. 67(12): 1240-1255 (2007) |
| 2006 |
|---|
| 53 | EE | Pang Ko,
Srinivas Aluru:
Obtaining Provably Good Performance from Suffix Trees in Secondary Storage.
CPM 2006: 72-83 |
| 52 | EE | Srikanta Tirthapura,
Sudip Seal,
Srinivas Aluru:
A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition.
ICPP 2006: 505-512 |
| 51 | EE | Anantharaman Kalyanaraman,
Scott J. Emrich,
Patrick S. Schnable,
Srinivas Aluru:
Assembling genomes on large-scale parallel computers.
IPDPS 2006 |
| 50 | | Sudip Seal,
Srinivas Aluru:
Communication-aware Parallel Domain Decomposition using Space Filling Curves.
ISCA PDCS 2006: 159-164 |
| 49 | EE | Srinivas Aluru,
David A. Bader,
Anantharaman Kalyanaraman:
M11 - High-performance computing methods for computational genomics.
SC 2006: 225 |
| 48 | EE | Srinivas Aluru,
Nancy M. Amato,
David A. Bader:
Editorial: Special Section on High-Performance Computational Biology.
IEEE Trans. Parallel Distrib. Syst. 17(8): 737-739 (2006) |
| 47 | EE | Anantharaman Kalyanaraman,
Srinivas Aluru:
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons.
J. Bioinformatics and Computational Biology 4(2): 197-216 (2006) |
| 2005 |
|---|
| 46 | EE | Benjamin G. Jackson,
Srinivas Aluru,
Patrick S. Schnable:
Consensus Genetic Maps: A Graph Theoretic Approach.
CSB 2005: 35-43 |
| 45 | EE | Anantharaman Kalyanaraman,
Srinivas Aluru:
Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons.
CSB 2005: 56-64 |
| 44 | | Zhenhui Shen,
Srinivas Aluru,
Srikanta Tirthapura:
Indexing for Subscription Covering in Publish-Subscribe Systems.
ISCA PDCS 2005: 328-333 |
| 43 | EE | Rama Sangireddy,
Natsuhiko Futamura,
Srinivas Aluru,
Arun K. Somani:
Scalable, memory efficient, high-speed IP lookup algorithms.
IEEE/ACM Trans. Netw. 13(4): 802-812 (2005) |
| 42 | EE | Sudip Seal,
Srikanth Komarina,
Srinivas Aluru:
An optimal hierarchical clustering algorithm for gene expression data.
Inf. Process. Lett. 93(3): 143-147 (2005) |
| 41 | EE | Pang Ko,
Srinivas Aluru:
Space efficient linear time construction of suffix arrays.
J. Discrete Algorithms 3(2-4): 143-156 (2005) |
| 40 | EE | Fatih Erdogan Sevilgen,
Srinivas Aluru,
Natsuhiko Futamura:
Parallel algorithms for tree accumulations.
J. Parallel Distrib. Comput. 65(1): 85-93 (2005) |
| 39 | EE | Bhanu Hariharan,
Srinivas Aluru:
Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods.
Parallel Computing 31(3-4): 311-331 (2005) |
| 2004 |
|---|
| 38 | EE | Pang Ko,
Mahesh Narayanan,
Anantharaman Kalyanaraman,
Srinivas Aluru:
Space-Conserving Optimal DNA-Protein Alignment .
CSB 2004: 80-88 |
| 37 | EE | Srinivas Aluru,
Fatih Erdogan Sevilgen:
Efficient Methods for Database Storage and Retrieval Using Space-Filling Curves.
ISCIS 2004: 503-512 |
| 36 | | Meng-Shiou Wu,
Ricky A. Kendall,
Srinivas Aluru:
A tunable collective communication framework on a cluster of SMPS.
Parallel and Distributed Computing and Networks 2004: 56-63 |
| 35 | EE | Scott J. Emrich,
Srinivas Aluru,
Yan Fu,
Tsui-Jung Wen,
Mahesh Narayanan,
Ling Guo,
Daniel A. Ashlock,
Patrick S. Schnable:
A strategy for assembling the maize (Zea mays L.) genome.
Bioinformatics 20(2): 140-147 (2004) |
| 34 | EE | David A. Bader,
Srinivas Aluru:
Special Issue: High Performance Computational Biology.
Concurrency - Practice and Experience 16(9): 817-821 (2004) |
| 33 | EE | Stjepan Rajko,
Srinivas Aluru:
Space and Time Optimal Parallel Sequence Alignments.
IEEE Trans. Parallel Distrib. Syst. 15(12): 1070-1081 (2004) |
| 2003 |
|---|
| 32 | EE | Pang Ko,
Srinivas Aluru:
Space Efficient Linear Time Construction of Suffix Arrays.
CPM 2003: 200-210 |
| 31 | EE | Stjepan Rajko,
Srinivas Aluru:
Space and Time Optimal Parallel Sequence Alignments.
ICPP 2003: 39-47 |
| 30 | EE | Srinivas Aluru,
Natsuhiko Futamura,
Kishan Mehrotra:
Parallel biological sequence comparison using prefix computations.
J. Parallel Distrib. Comput. 63(3): 264-272 (2003) |
| 29 | EE | Srinivas Aluru,
David A. Bader:
Guest Editor's Introduction: Special issue on high-performance computational biology.
J. Parallel Distrib. Comput. 63(7-8): 671-673 (2003) |
| 28 | EE | Natsuhiko Futamura,
Srinivas Aluru,
Xiaoqiu Huang:
Parallel Syntenic Alignments.
Parallel Processing Letters 13(4): 689-703 (2003) |
| 2002 |
|---|
| 27 | EE | Meng-Shiou Wu,
Srinivas Aluru,
Ricky A. Kendall:
Mixed Mode Matrix Multiplication.
CLUSTER 2002: 195- |
| 26 | EE | Natsuhiko Futamura,
Srinivas Aluru,
Xiaoqiu Huang:
Parallel Syntenic Alignments.
HiPC 2002: 420-430 |
| 25 | EE | Anantharaman Kalyanaraman,
Srinivas Aluru,
Suresh C. Kothari:
Space and Time Efficient Parallel Algorithms and Software for EST Clustering.
ICPP 2002: 331- |
| 24 | EE | Anantharaman Kalyanaraman,
Srinivas Aluru,
Suresh C. Kothari:
Parallel EST Clustering.
IPDPS 2002 |
| 23 | EE | David A. Bader,
Srinivas Aluru:
Workshop Introduction.
IPDPS 2002 |
| 22 | EE | Bhanu Hariharan,
Srinivas Aluru,
Balasubramaniam Shanker:
A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces.
SC 2002: 1-17 |
| 21 | EE | Natsuhiko Futamura,
Srinivas Aluru,
Desh Ranjan,
Bhanu Hariharan:
Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins.
IEEE Trans. Parallel Distrib. Syst. 13(6): 544-555 (2002) |
| 2001 |
|---|
| 20 | EE | Bhanu Hariharan,
Srinivas Aluru:
Efficient Parallel Algorithms and Software for Compressed Octrees with Applications to Hierarchical Methods.
HiPC 2001: 125-136 |
| 2000 |
|---|
| 19 | EE | Fatih Erdogan Sevilgen,
Natsuhiko Futamura,
Srinivas Aluru:
A Provably Optimal, Distribution-Independent Parallel Fast Multipole Method.
IPDPS 2000: 77-84 |
| 18 | EE | Ibraheem Al-Furaih,
Srinivas Aluru,
Sanjay Goil,
Sanjay Ranka:
Parallel Construction of Multidimensional Binary Search Trees.
IEEE Trans. Parallel Distrib. Syst. 11(2): 136-148 (2000) |
| 1999 |
|---|
| 17 | EE | Srinivas Aluru,
Fatih Erdogan Sevilgen:
Dynamic Compressed Hypertoctrees with Application to the N-Body Problem.
FSTTCS 1999: 21-33 |
| 16 | | Srinivas Aluru,
Desh Ranjan,
Natsuhiko Futamura:
A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation.
HiPC 1999: 339-348 |
| 15 | EE | Srinivas Aluru,
Natsuhiko Futamura,
Kishan Mehrotra:
Parallel Biological Sequence Comparison Using Prefix Computations.
IPPS/SPDP 1999: 653-659 |
| 14 | | Srinivas Aluru,
Songrit Maneewongvatana:
A Practical Parallel Algorithm for Line Segment Visibility.
PDPTA 1999: 1676-1682 |
| 1998 |
|---|
| 13 | EE | Srinivas Aluru,
John L. Gustafson,
Gurpur M. Prabhu,
Fatih Erdogan Sevilgen:
Distribution-Independent Hierarchical Algorithms for the N-body Problem.
The Journal of Supercomputing 12(4): 303-323 (1998) |
| 1997 |
|---|
| 12 | EE | Ibraheem Al-furiah,
Srinivas Aluru,
Sanjay Goil,
Sanjay Ranka:
Practical Algorithms for Selection on Coarse-Grained Parallel Computers.
IEEE Trans. Parallel Distrib. Syst. 8(8): 813-824 (1997) |
| 11 | | Srinivas Aluru:
Lagged Fibonacci Random Number Generators for Distributed Memory Parallel Computers.
J. Parallel Distrib. Comput. 45(1): 1-12 (1997) |
| 1996 |
|---|
| 10 | EE | Ibraheem Al-Furaih,
Srinivas Aluru,
Sanjay Goil,
Sanjay Ranka:
Practical Algorithms for Selection on Coarse-Grained Parallel Computers.
IPPS 1996: 309-313 |
| 9 | EE | Srinivas Aluru:
Parallel Additive Lagged Fibonacci Random Number Generators.
International Conference on Supercomputing 1996: 102-108 |
| 8 | EE | Ibraheem Al-Furaih,
Srinivas Aluru,
Sanjay Goil,
Sanjay Ranka:
Parallel Construction of Multidimensional Binary Search Trees.
International Conference on Supercomputing 1996: 205-212 |
| 7 | | Srinivas Aluru,
Songrit Maneewongvatana:
Practical Paralle1 Algorithm for Constructing Line Arrangements.
PDPTA 1996: 125-135 |
| 6 | EE | John L. Gustafson,
Srinivas Aluru:
Massively Parallel Searching for Better Algorithms or How to Do a Cross Product with Five Multiplications.
Scientific Programming 5(3): 203-217 (1996) |
| 1995 |
|---|
| 5 | | Srinivas Aluru:
Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators.
ICPP (3) 1995: 25-28 |
| 1994 |
|---|
| 4 | EE | Srinivas Aluru,
Gurpur M. Prabhu,
John L. Gustafson:
Truly distribution-independent algorithms for the N-body problem.
SC 1994: 420-428 |
| 1993 |
|---|
| 3 | EE | Srinivas Aluru,
John L. Gustafson:
A Massively Parallel Optimizer for Expression Evaluation.
International Conference on Supercomputing 1993: 97-106 |
| 2 | | Srinivas Aluru,
John L. Gustafson:
Subtle Issues of SIMD Tree Search.
PARCO 1993: 49-56 |
| 1992 |
|---|
| 1 | | Srinivas Aluru,
Gurpur M. Prabhu,
John L. Gustafson:
A random number generator for parallel computers.
Parallel Computing 18(8): 839-847 (1992) |
