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Srinivas Aluru

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2009
71EEBenjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Assembly of Large Genomes from Paired Short Reads. BICoB 2009: 30-43
2008
70EEJaroslaw Zola, Maneesha Aluru, Srinivas Aluru: Parallel Information Theory Based Construction of Gene Regulatory Networks. HiPC 2008: 336-349
69EESudip Seal, Michael Moody, Anna Ceguerra, Simon Ringer, Krishna Rajan, Srinivas Aluru: Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L. ICPP 2008: 338-345
68EEBenjamin G. Jackson, Srinivas Aluru: Parallel Construction of Bidirected String Graphs for Genome Assembly. ICPP 2008: 346-353
67EEAndrew Janowczyk, Sharat Chandran, Srinivas Aluru: Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application. ICVGIP 2008: 171-178
66EEAbhinav Sarje, Srinivas Aluru: Parallel biological sequence alignments on the Cell Broadband Engine. IPDPS 2008: 1-11
65EESrinivas Aluru: Text Indexing. Encyclopedia of Algorithms 2008
64EEBenjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Consensus Genetic Maps as Median Orders from Inconsistent Sources. IEEE/ACM Trans. Comput. Biology Bioinform. 5(2): 161-171 (2008)
63EEDavid A. Bader, Srinivas Aluru: High-performance computational biology. Parallel Computing 34(11): 613-615 (2008)
62EEMichael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis: Large-scale phylogenetic analysis on current HPC architectures. Scientific Programming 16(2-3): 255-270 (2008)
2007
61 Srinivas Aluru, Manish Parashar, Ramamurthy Badrinath, Viktor K. Prasanna: High Performance Computing - HiPC 2007, 14th International Conference, Goa, India, December 18-21, 2007, Proceedings Springer 2007
60EESrinivas Aluru: The Combinatorics of Sequencing the Corn Genome. COCOON 2007: 1
59EESrinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. IPDPS 2007: 13
58 Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Srinivas Aluru: PARALLEL-TCOFFEE: A parallel multiple sequence aligner. ISCA PDCS 2007: 248-253
57 Scott J. Emrich, Anantharaman Kalyanaraman, Srinivas Aluru: Massively parallel expressed sequence tag clustering. ISCA PDCS 2007: 254-261
56EEMichael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru: Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. SC 2007: 4
55EEPang Ko, Srinivas Aluru: Optimal Self-adjusting Trees for Dynamic String Data in Secondary Storage. SPIRE 2007: 184-194
54EEAnantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru: Assembling genomes on large-scale parallel computers. J. Parallel Distrib. Comput. 67(12): 1240-1255 (2007)
2006
53EEPang Ko, Srinivas Aluru: Obtaining Provably Good Performance from Suffix Trees in Secondary Storage. CPM 2006: 72-83
52EESrikanta Tirthapura, Sudip Seal, Srinivas Aluru: A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition. ICPP 2006: 505-512
51EEAnantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru: Assembling genomes on large-scale parallel computers. IPDPS 2006
50 Sudip Seal, Srinivas Aluru: Communication-aware Parallel Domain Decomposition using Space Filling Curves. ISCA PDCS 2006: 159-164
49EESrinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: M11 - High-performance computing methods for computational genomics. SC 2006: 225
48EESrinivas Aluru, Nancy M. Amato, David A. Bader: Editorial: Special Section on High-Performance Computational Biology. IEEE Trans. Parallel Distrib. Syst. 17(8): 737-739 (2006)
47EEAnantharaman Kalyanaraman, Srinivas Aluru: Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons. J. Bioinformatics and Computational Biology 4(2): 197-216 (2006)
2005
46EEBenjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable: Consensus Genetic Maps: A Graph Theoretic Approach. CSB 2005: 35-43
45EEAnantharaman Kalyanaraman, Srinivas Aluru: Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. CSB 2005: 56-64
44 Zhenhui Shen, Srinivas Aluru, Srikanta Tirthapura: Indexing for Subscription Covering in Publish-Subscribe Systems. ISCA PDCS 2005: 328-333
43EERama Sangireddy, Natsuhiko Futamura, Srinivas Aluru, Arun K. Somani: Scalable, memory efficient, high-speed IP lookup algorithms. IEEE/ACM Trans. Netw. 13(4): 802-812 (2005)
42EESudip Seal, Srikanth Komarina, Srinivas Aluru: An optimal hierarchical clustering algorithm for gene expression data. Inf. Process. Lett. 93(3): 143-147 (2005)
41EEPang Ko, Srinivas Aluru: Space efficient linear time construction of suffix arrays. J. Discrete Algorithms 3(2-4): 143-156 (2005)
40EEFatih Erdogan Sevilgen, Srinivas Aluru, Natsuhiko Futamura: Parallel algorithms for tree accumulations. J. Parallel Distrib. Comput. 65(1): 85-93 (2005)
39EEBhanu Hariharan, Srinivas Aluru: Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods. Parallel Computing 31(3-4): 311-331 (2005)
2004
38EEPang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru: Space-Conserving Optimal DNA-Protein Alignment . CSB 2004: 80-88
37EESrinivas Aluru, Fatih Erdogan Sevilgen: Efficient Methods for Database Storage and Retrieval Using Space-Filling Curves. ISCIS 2004: 503-512
36 Meng-Shiou Wu, Ricky A. Kendall, Srinivas Aluru: A tunable collective communication framework on a cluster of SMPS. Parallel and Distributed Computing and Networks 2004: 56-63
35EEScott J. Emrich, Srinivas Aluru, Yan Fu, Tsui-Jung Wen, Mahesh Narayanan, Ling Guo, Daniel A. Ashlock, Patrick S. Schnable: A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics 20(2): 140-147 (2004)
34EEDavid A. Bader, Srinivas Aluru: Special Issue: High Performance Computational Biology. Concurrency - Practice and Experience 16(9): 817-821 (2004)
33EEStjepan Rajko, Srinivas Aluru: Space and Time Optimal Parallel Sequence Alignments. IEEE Trans. Parallel Distrib. Syst. 15(12): 1070-1081 (2004)
2003
32EEPang Ko, Srinivas Aluru: Space Efficient Linear Time Construction of Suffix Arrays. CPM 2003: 200-210
31EEStjepan Rajko, Srinivas Aluru: Space and Time Optimal Parallel Sequence Alignments. ICPP 2003: 39-47
30EESrinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra: Parallel biological sequence comparison using prefix computations. J. Parallel Distrib. Comput. 63(3): 264-272 (2003)
29EESrinivas Aluru, David A. Bader: Guest Editor's Introduction: Special issue on high-performance computational biology. J. Parallel Distrib. Comput. 63(7-8): 671-673 (2003)
28EENatsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. Parallel Processing Letters 13(4): 689-703 (2003)
2002
27EEMeng-Shiou Wu, Srinivas Aluru, Ricky A. Kendall: Mixed Mode Matrix Multiplication. CLUSTER 2002: 195-
26EENatsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. HiPC 2002: 420-430
25EEAnantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari: Space and Time Efficient Parallel Algorithms and Software for EST Clustering. ICPP 2002: 331-
24EEAnantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari: Parallel EST Clustering. IPDPS 2002
23EEDavid A. Bader, Srinivas Aluru: Workshop Introduction. IPDPS 2002
22EEBhanu Hariharan, Srinivas Aluru, Balasubramaniam Shanker: A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces. SC 2002: 1-17
21EENatsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan: Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. IEEE Trans. Parallel Distrib. Syst. 13(6): 544-555 (2002)
2001
20EEBhanu Hariharan, Srinivas Aluru: Efficient Parallel Algorithms and Software for Compressed Octrees with Applications to Hierarchical Methods. HiPC 2001: 125-136
2000
19EEFatih Erdogan Sevilgen, Natsuhiko Futamura, Srinivas Aluru: A Provably Optimal, Distribution-Independent Parallel Fast Multipole Method. IPDPS 2000: 77-84
18EEIbraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Parallel Construction of Multidimensional Binary Search Trees. IEEE Trans. Parallel Distrib. Syst. 11(2): 136-148 (2000)
1999
17EESrinivas Aluru, Fatih Erdogan Sevilgen: Dynamic Compressed Hypertoctrees with Application to the N-Body Problem. FSTTCS 1999: 21-33
16 Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura: A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. HiPC 1999: 339-348
15EESrinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra: Parallel Biological Sequence Comparison Using Prefix Computations. IPPS/SPDP 1999: 653-659
14 Srinivas Aluru, Songrit Maneewongvatana: A Practical Parallel Algorithm for Line Segment Visibility. PDPTA 1999: 1676-1682
1998
13EESrinivas Aluru, John L. Gustafson, Gurpur M. Prabhu, Fatih Erdogan Sevilgen: Distribution-Independent Hierarchical Algorithms for the N-body Problem. The Journal of Supercomputing 12(4): 303-323 (1998)
1997
12EEIbraheem Al-furiah, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Practical Algorithms for Selection on Coarse-Grained Parallel Computers. IEEE Trans. Parallel Distrib. Syst. 8(8): 813-824 (1997)
11 Srinivas Aluru: Lagged Fibonacci Random Number Generators for Distributed Memory Parallel Computers. J. Parallel Distrib. Comput. 45(1): 1-12 (1997)
1996
10EEIbraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Practical Algorithms for Selection on Coarse-Grained Parallel Computers. IPPS 1996: 309-313
9EESrinivas Aluru: Parallel Additive Lagged Fibonacci Random Number Generators. International Conference on Supercomputing 1996: 102-108
8EEIbraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Parallel Construction of Multidimensional Binary Search Trees. International Conference on Supercomputing 1996: 205-212
7 Srinivas Aluru, Songrit Maneewongvatana: Practical Paralle1 Algorithm for Constructing Line Arrangements. PDPTA 1996: 125-135
6EEJohn L. Gustafson, Srinivas Aluru: Massively Parallel Searching for Better Algorithms or How to Do a Cross Product with Five Multiplications. Scientific Programming 5(3): 203-217 (1996)
1995
5 Srinivas Aluru: Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators. ICPP (3) 1995: 25-28
1994
4EESrinivas Aluru, Gurpur M. Prabhu, John L. Gustafson: Truly distribution-independent algorithms for the N-body problem. SC 1994: 420-428
1993
3EESrinivas Aluru, John L. Gustafson: A Massively Parallel Optimizer for Expression Evaluation. International Conference on Supercomputing 1993: 97-106
2 Srinivas Aluru, John L. Gustafson: Subtle Issues of SIMD Tree Search. PARCO 1993: 49-56
1992
1 Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson: A random number generator for parallel computers. Parallel Computing 18(8): 839-847 (1992)

Coauthor Index

1Ibraheem Al-Furaih [8] [10] [18]
2Ibraheem Al-furiah [12]
3Maneesha Aluru [70]
4Nancy M. Amato [48]
5Daniel A. Ashlock (Dan Ashlock) [35]
6David A. Bader [23] [29] [34] [48] [49] [59] [63]
7Ramamurthy Badrinath [61]
8Anna Ceguerra [69]
9Sharat Chandran [67]
10Scott J. Emrich [35] [51] [54] [57]
11Yan Fu [35]
12Natsuhiko Futamura [15] [16] [19] [21] [26] [28] [30] [40] [43]
13Sanjay Goil [8] [10] [12] [18]
14Ling Guo [35]
15John L. Gustafson [1] [2] [3] [4] [6] [13]
16Bhanu Hariharan [20] [21] [22] [39]
17Xiaoqiu Huang [26] [28]
18Benjamin G. Jackson [46] [64] [68] [71]
19Daniel Janies [62]
20Andrew Janowczyk [67]
21Andrew D. Johnson [62]
22Anantharaman Kalyanaraman (Ananth Kalyanaraman) [24] [25] [38] [45] [47] [49] [51] [54] [57] [59]
23Ricky A. Kendall [27] [36]
24Pang Ko [32] [38] [41] [53] [55]
25Srikanth Komarina [42]
26Suresh C. Kothari [24] [25]
27Songrit Maneewongvatana [7] [14]
28Kishan G. Mehrotra (Kishan Mehrotra) [15] [30]
29Michael Moody [69]
30Mahesh Narayanan [35] [38]
31Michael Ott [56] [62]
32Manish Parashar [61]
33Gurpur M. Prabhu [1] [4] [13]
34Viktor K. Prasanna (V. K. Prasanna Kumar) [61]
35Krishna Rajan [69]
36Stjepan Rajko [31] [33]
37Desh Ranjan [16] [21]
38Sanjay Ranka [8] [10] [12] [18]
39Simon Ringer [69]
40Adrian Rospondek [58]
41Rama Sangireddy [43]
42Abhinav Sarje [66]
43Patrick S. Schnable [35] [46] [51] [54] [64] [71]
44Sudip Seal [42] [50] [52] [69]
45Fatih Erdogan Sevilgen [13] [17] [19] [37] [40]
46Balasubramaniam Shanker [22]
47Zhenhui Shen [44]
48Arun K. Somani [43]
49Alexandros Stamatakis [56] [62]
50Srikanta Tirthapura [44] [52]
51Tsui-Jung Wen [35]
52Meng-Shiou Wu [27] [36]
53Xiao Yang [58]
54Jaroslaw Zola [56] [58] [62] [70]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)